Rhodanobacter denitrificans: R2APBS1_3534
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Entry
R2APBS1_3534 CDS
T02495
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R2APBS1_3534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhd03019
]
R2APBS1_3534
Enzymes [BR:
rhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R2APBS1_3534
Messenger RNA biogenesis [BR:
rhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R2APBS1_3534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGG90597
UniProt:
M4NKJ1
LinkDB
All DBs
Position
complement(3750800..3752593)
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AA seq
597 aa
AA seq
DB search
MQRITPPSGKVNHPHMSQTVLTDTFFANFDLHPLLQQGLDDSGFTRCTPIQEMTLPLALA
GRDVAGQAQTGTGKTCAFLVALMNHLLTTPAVAERKDSDPRALVIAPTRELAIQIEKDAK
AIGRHTGLRSALIYGGVDYDKQRQQLKDGCDIIIATPGRLLDYHKQGVFSLNSVEVMVID
EADRMFDLGFIKDVRFIFRKLPPREQRQVLLFSATLSHRVLELAYEHMHEAEKLVVESDH
VTADKVRQVVYFPAKEEKMPLLLNLIDRHKPSRSIIFVNTKAAAERVTERVKRHGCRVGA
ISGDVPQLKRQKLLQRFQDGQLDILVATDVAARGLHIPAVSHVFNYDLPHEAEDYVHRIG
RTARLGAEGDAISFACDLYAMSLPDIETYIGQSIPVGAMEPELLVMPKPHAIDPEFAANA
AADSAAFGDVVAPRPGEKPRRSGAPGRSGERSGSSRGAARPPRERKPELADGRVTAAEQP
AVEGVHKTEAAPRADAGPAAEGTRKPRRRRGGRNRRREGAPTDGVETTGHQPAVAEGNRA
PRGERRPPRERNAAESAGSGHSRPSRQVAVTSGKPSEHAHPKKPSLFRRLTRLFTGR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcgcatcacgccgccgtcaggcaaggtcaaccatccgcatatgtcacaaaccgta
ctcaccgacaccttcttcgccaacttcgatcttcatccgctgctgcagcagggtctggac
gacagcggtttcacccgctgcacgccgatccaggaaatgactctgccgctagcgctggcc
gggcgcgacgttgccggccaggcgcagaccggcaccggcaagacctgcgccttcctggtc
gcgctgatgaaccacctgctgaccaccccggcggtggccgagcgcaaggacagcgacccg
cgcgcgctggtgatcgcgcccacccgcgagctggccatccagatcgagaaggacgccaag
gcgatcggccgccacaccggcctgcgcagcgcgctgatctacggcggcgtcgactacgac
aagcagcgccagcagctgaaggacggctgcgacatcatcatcgccaccccgggccgactg
ctcgactaccacaagcagggcgtgttcagcctcaacagcgtcgaggtgatggtgatcgac
gaggccgaccgcatgttcgacctcggcttcatcaaggacgtgcgcttcattttccgcaag
ctgccgccgcgcgagcagcgccaagtgctgctgttctccgccaccttgagccaccgcgtg
ctggagctggcctacgagcacatgcacgaggccgagaagctggtggtggagagcgaccac
gtcactgccgacaaggtgcgccaggtcgtctacttcccggccaaggaagagaagatgccg
ctgctgctgaacctgatcgaccggcacaagccgtcgcgcagcatcatcttcgtcaacacc
aaggctgccgccgagcgcgtcaccgagcgggtcaagcgccatggctgccgggtcggcgcg
atctccggcgacgtgccgcagctgaagcggcagaagctgctgcagcgcttccaggacggc
cagctcgacatcctggtggccaccgacgtggccgcgcgcggcctgcacatcccggcggtc
agccacgtcttcaactacgacctgccgcacgaagccgaggactacgtgcatcgcatcggc
cgcaccgcgcggctcggcgccgagggcgacgcgatcagcttcgcctgcgacctgtacgcg
atgagcctgccggacatcgagacctacatcggccagagcatcccggtcggcgcgatggag
ccggagctgctggtgatgccgaagccgcacgcgatcgaccccgagttcgccgccaacgcc
gccgccgacagcgccgcgtttggcgacgtggtggcgccgcggccgggcgagaagccgcgc
cgcagcggcgccccgggtcgcagcggcgagcgcagcggaagcagccgcggcgccgcgcgt
ccgccgcgcgagcgcaagccggagctggccgacggccgtgtcaccgccgccgaacagccg
gccgtcgagggcgtgcacaagaccgaggcggcaccgcgggcagatgccggtccggccgcc
gaagggacgcgcaagccgcggcgccgtcgcggcggccgcaatcgtcgccgtgaaggcgcg
ccgaccgatggcgtcgagacgaccggccaccagcccgcggtcgccgaaggcaatcgcgca
ccgcgcggcgagcgtcgcccgccccgcgagcgcaacgcggccgagtccgcgggcagcggc
cacagccggccgtcgcggcaggtcgcggtgacttcgggcaagcccagcgagcacgcccat
ccgaagaagccgagcctgttccgtcgcctgacccggctgttcaccggccgctga
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