Rickettsia conorii subsp. heilongjiangensis: Rh054_01065
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Entry
Rh054_01065 CDS
T01587
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhe
Rickettsia conorii subsp. heilongjiangensis
Pathway
rhe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rh054_01065 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhe03021
]
Rh054_01065 (rpoB)
03400 DNA repair and recombination proteins [BR:
rhe03400
]
Rh054_01065 (rpoB)
Enzymes [BR:
rhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rh054_01065 (rpoB)
Transcription machinery [BR:
rhe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rh054_01065 (rpoB)
DNA repair and recombination proteins [BR:
rhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rh054_01065 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AEK74223
LinkDB
All DBs
Position
184442..188563
Genome browser
AA seq
1373 aa
AA seq
DB search
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCEIFRVLRPGEPANIEAAESLFYNLFFDTERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGCVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNF
IMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKFAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLK
GLSKGQFWQITVEDANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKKYKNKHIGIEQIKKFLIELYGENINSILERPEEEIIS
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaactttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctccaatattgctaat
ttagaatttgtaaaatatgaattcgatactccaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaagattaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcacctggtgtattcttttatcatgatgaaggaaaagtccac
tcttctggcaagcttttatattctgctcgtgttattccatatagagggtcttggcttgat
ttagaattcgacgctaaggatgttatttatttcaggattgatagaaaaagaaagctttat
actactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcggtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtagatgcagataccggaaatattcta
ctgaaagcaggacaaaaaattactccgcgtttggctaaaaaatattttggggaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaaga
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgattactgctgatatgcta
aatgttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatcc
ggtccatatataaggaacaccttatttgctgataaaaatcaggatcgtgaggcagcatta
tgtgagattttcagggttctaagaccaggcgaacctgctaatatcgaagcggctgaaagt
ctgttttataatttattctttgatacggaaagatatgatctttcagaagtcgggcgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaatagaagggttagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctatcggcactcggtcccggaggtcttagtcgagatcgggca
ggttttgaggtgcgtgatgtacatccaactcattacggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctagaataaataaa
cacggttttatagagagtccgtatagaagagttaaagatggatgtgtaaccgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaattggacaagcaaattctaaagtt
aataaagacggaaagctgcaaggagagtttattaattgccgtgttgaaggcggtaatttt
ataatggtagaaccgtatgaggtagacttcattgatgtgactcctatgcaggtagtatcg
gttgcggcttctcttatacctttcttagaaaacgatgatgctaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattccggagcgtcagtgcttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaacgctagaacaaaaagttgac
ggttctccttcggttgatatttataacttactaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgacggtcctagtacggataacggtgaaattgctttaggtcgaaacgtgcttgtggct
ttcttaccttggaacggttataattttgaagattccattttaatatctgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaggtcggaataatttatataggtgcagaagtaaaagccggtgatatttta
gttggaaaagtaacaccaaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgatgtaaaagattcatcgctgcatgtaccttccgga
gttagtggaactgtagtagaagtaagggtattttctcgtagaggtgtagaaaaagaccag
cgcgctattgctattgaaaaacaacaaattgaaaaatttgcaaaagacagagacgatgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtagggcaagtg
attattaacggtcctaagcaagtaaaagtaggacaaactattactactgaaatgctaaaa
ggcttatctaaagggcaattttggcagattaccgtggaagatgcaaatgtaatgaatgaa
atagagcagataaagactcattatgatgagaaaaaagaggctcttgataaaagatttgct
actaaggtagagaaattgcaaagtggtgatgatttacctcagggagctttaaaagtagta
aaagtatttattgcaactaagcataaattacaacccggggataaaatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccgtttttagaagat
ggaactgtggtagatatcgttcttaaccctctaggtcttccgtcccgtatgaatatagga
cagattttagaaacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaagaaatataaaaataaacatataggtattgagcagattaagaaattcttaatt
gaactgtatggagaaaatattaattctatacttgaaagaccggaagaagagattatctct
ttttgtaagaaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggatgttaaagatatgctaaagcttgccggtcaagacccttcaggacaagtgaaa
ttaattgacggtagaaccggtgaatattttgatcgtctagtaaccgtcggacagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcactcccgttctataggaccttat
agcttagtaacgcagcaaccgcttggaggtaagtctcatttcggcggacagcgtttcggg
gaaatggaatgctgggcattacaagcttacggtgcagcttatacgttacaggaaatgtta
acggttaagtcggatgacgtaaatggtaggatcaaaacttatgattctatagtacgcggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcaagttaa
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