Ruminiclostridium herbifermentans: EHE19_002555
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Entry
EHE19_002555 CDS
T07161
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rher
Ruminiclostridium herbifermentans
Pathway
rher03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EHE19_002555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rher03400
]
EHE19_002555 (mfd)
Enzymes [BR:
rher01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EHE19_002555 (mfd)
DNA repair and recombination proteins [BR:
rher03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EHE19_002555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
DUF2089
MFD_D3
RecG_dom3_C
UB2H
AA_kinase
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QNU67432
UniProt:
A0A4U7JF82
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All DBs
Position
606232..609756
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AA seq
1174 aa
AA seq
DB search
MNLFTDPLLKLKEYNTLLSAIKEDMGAVSVIGPSDSQKVHLIYSLCTHAKTRGLFITYNE
MQARRVFDDFSLFLGDDVLYLPPKETMLYDVEARSNDIIYQRVKTLLRCMQGDYKILVVS
AEALVQMISPMDIFRDGIISINVGTQIELDELISKLVLYGYERVELVEGKAQFAVRGGII
DIFSINEEQPFRIELFDTEVDSIRYFDANTQRSTEAIDKCQISPARDVVYKQGTKENIIS
KINKDLSEYVKKLNKKGNSDISSKIVKRVNEDIEKINTNHYFAGIDRYMPYILEKPASIL
DYIDNDVIAVFDETLRIEQRIENLALEQDELYKSMLEKGAMLPNGASWDHSMDYILKSVH
RLRIVTMAAISSNNSFIRPYTQISIPCRTGNSYQNHMELLVNDIQHLREKEYKIIVLSGP
SGRGHRLVETLAANEIVANFVDNLDRELLNKEVVITRGSLQKGFEYPTIGFVIISDKEVF
GQDKRIKKAKSKHDGNKIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSVGEIKRDYLKIKY
QDNGFLYIPTNQLDLIQKYIGSEGKVPKVNKLGGTEWAKTKNRVKESLRELAAELIKLYA
QREASNGFAFSKDTVWQRQFEEIFPYDETDDQLKCIDEIKKDMESNKHMDRLLCGDVGYG
KTEVAIRAVFKAVMDGKQVAYLVPTTILAQQHFENFKKRMSDFPVTVDVISRFRTAAEQK
KIIRDVKNGNIDVLIGTHRLLQKDIEFKDLGLLVVDEEQRFGVSHKEKLKALKPNVDALT
LTATPIPRTLHMSLVGIRDISVIEDPPEERYPVQTYVMEYNAELIRDGIIRELSRNGQVF
YLYNRVRGIELKANEIKTLVPEARVAIAHGQMNEKELEDIMYSFINGEYDVLVCTTIIES
GLDMPNVNTIIVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKRDKVLSEVAEKRLQAI
KEFTEFGSGFRIAMRDLEIRGAGNLLGSEQHGHMETVGYEMYCKLLEEAVREYSGDNSNI
SDEEISIDLNVSAYIDDDYISSEELKIDMYKKIAAILDENDVIDIKDELIDRYGDIPEEV
ENLMDIAYIKMLAKKCGFINVQQKDDYVIFQLSKSAVKVSLYIGSLMDKYPRRILFNASS
NPYITFKLNNNNAKDILSNIKILLHDIIKLQYLE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacagatcctctactgaaattaaaagagtataatacacttttatctgct
ataaaggaagatatgggtgctgtttcggttattggaccatctgattctcagaaggttcat
ttaatatattcattgtgtactcatgcaaagaccagaggtctgtttataacatataatgaa
atgcaggctagaagagtatttgatgatttttcgttatttctaggggatgatgttctctat
ttaccgccgaaggaaactatgctttacgatgttgaagctaggagtaatgatattatctat
caaagagttaaaaccctattacgatgtatgcagggtgactataaaatattggttgtttca
gcagaagcacttgttcaaatgatatctcctatggacatattcagagatggaattatatcc
attaatgttggaacacaaattgaattagatgagttaatatcaaaactagtattatatgga
tatgaaagagttgaattagtagagggaaaggcgcaatttgcagttcgtggaggaattatc
gatatattttcaataaatgaggagcaaccctttcgtatagaactttttgatactgaagtt
gactccattagatactttgatgccaatactcagcgttcaacggaagcaatagacaaatgt
cagatatcacctgccagagatgttgtatataagcaaggaacgaaggaaaatattatttcc
aagattaataaggatttatcagaatatgtaaagaagctaaacaagaaaggaaattctgat
ataagcagcaaaatagttaaaagggttaatgaggacattgaaaaaattaatacaaaccac
tattttgcaggaatagacagatatatgccatatatactggaaaaaccagcatcaattctt
gattacattgacaacgatgtaatagccgtctttgatgaaacattgcgaattgaacagaga
attgagaatttagcccttgaacaggatgaattgtataaaagtatgcttgagaagggtgca
atgttgccaaatggagcaagctgggatcactctatggattatattttaaagagtgttcat
aggttaagaattgttactatggctgcaatttcttcaaataattcttttataaggccatat
actcaaatttcaattccgtgcaggactggtaattcatatcaaaatcatatggagttgctt
gttaatgatatacagcatttaagagaaaaagaatataaaattattgttctttcaggtcct
agcggaagaggtcatagattagttgaaacacttgcagctaatgaaattgtggcaaacttt
gtagataaccttgatagagaacttttaaacaaagaggttgtgataacccgtggaagcctt
caaaagggatttgaataccctacaataggttttgtaataataagtgacaaagaagtattt
ggacaagacaaaaggataaagaaggcaaaatccaagcatgatggtaataaaattaaggca
ttctctgacctgaatgtaggtgattttgttgttcaccaagcacatggaataggacaatat
ataggtattgaaaaattatcagttggtgaaattaagagagattatcttaaaataaaatat
caggataatggctttttgtatattccaacaaaccagttagatttaattcaaaaatatata
ggctcagagggcaaggtgccaaaggttaataaacttggtggtacagaatgggctaaaaca
aaaaatagggtaaaagaatcacttagagagcttgctgctgagttaataaagctgtatgca
caacgtgaagcatcaaatggatttgctttttctaaagacacagtttggcaaagacagttt
gaagaaatttttccttatgatgaaacagatgatcaactgaagtgtattgatgaaataaag
aaggatatggaatcaaataagcacatggataggcttctctgtggtgatgtaggatatgga
aagactgaggttgcaataagagcagtatttaaggctgtaatggatgggaaacaggttgcc
taccttgttccaacaactatattggcgcagcagcattttgagaattttaagaagagaatg
agtgattttcctgtaacagtagatgtaataagcagatttcgtacagcagctgaacagaag
aaaataataagggatgtaaagaatggaaatatagatgtactaattggaactcatagatta
ctgcaaaaggacattgaatttaaagacttaggacttcttgtagttgatgaagaacaacga
tttggtgtaagtcataaagaaaagctaaaagcgttaaagcctaatgtagatgcgttgact
ttaacggctacacctataccaagaaccttgcacatgtctttagtaggaataagagacata
agtgtaatagaagatcctcctgaggagaggtatcctgttcaaacatatgtaatggagtat
aatgctgaattaataagggatggcataattagagaactttcacgaaatggacaggttttt
tatctatataacagggttagaggaattgaactaaaggctaacgaaattaagacccttgta
cctgaagcgagagtagctatagcccatggtcaaatgaatgaaaaagaattagaagacatt
atgtatagctttataaacggtgaatatgatgttttagtttgtacaacaattattgaatcg
gggctagacatgccaaatgtgaacacaataatagttgaggatgcagacagaatgggactg
tctcaactatatcaaataagaggtagagtgggccgctcaaatagattggcctatgcgtat
attacttacaaaagggataaggtattgtctgaggtggctgaaaaaaggcttcaggctata
aaagagtttactgagtttggctcaggtttcagaatagcaatgagggatttggaaatcaga
ggtgctggtaatttacttggctctgagcagcacgggcatatggaaactgtgggatatgaa
atgtattgcaagctgcttgaggaagctgtccgtgaatatagtggtgataacagtaatata
tctgatgaggaaatttccattgacttaaatgtaagtgcatatattgatgatgattatata
agttctgaggaactaaaaatagatatgtacaagaaaatagcagccatactagatgaaaat
gatgtaattgatattaaggatgaacttatagatagatatggagatattccagaggaagta
gaaaatttaatggatatagcatatataaagatgcttgcaaagaaatgtggatttattaat
gtgcagcaaaaggacgattatgttatttttcaattaagtaaatctgcagtcaaagtttca
ttatatatcggaagtcttatggataaataccctagaagaattttgtttaatgcaagcagt
aatccatatataacatttaaactgaataataataatgcaaaggatatactgtcaaatatt
aagattttattacatgacattattaaattgcagtatttagaataa
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