KEGG   Ruminiclostridium herbifermentans: EHE19_003365
Entry
EHE19_003365      CDS       T07161                                 
Name
(GenBank) DNA polymerase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rher  Ruminiclostridium herbifermentans
Pathway
rher03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rher00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EHE19_003365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rher03400]
    EHE19_003365
Enzymes [BR:rher01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EHE19_003365
DNA repair and recombination proteins [BR:rher03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EHE19_003365
SSDB
Motif
Pfam: LigD_Prim-Pol DUF4901
Other DBs
NCBI-ProteinID: QNU67569
UniProt: A0A7H1VQA7
LinkDB
Position
787109..788014
AA seq 301 aa
MDIVDIKLKIENKIIDLTNPDKLLWPEADITKKRYVETMTVLAPFIIKYSKNRLLTAIRY
PHGIGGKSFFQKEKPDNTPEWIKTVKFNDKNYIVVNSAATLIWLCTQAVLEFHTSFNAYN
NLDHPSHLVFDLDPDDNQDFREVSEIALSIYETLETLGINGFVKTSGASGLQIYIPTASK
YDYNSARKLNEFFAQYFIQKLSKKLTIERLKKNRDGKTYFDYMQMWYGKTIIAPYSPRAV
MSAAVSTPLEWKELNWARPELFTLNNIAARLEQKGDLFEASLHCKNNEQLDEILKKLNTI
N
NT seq 906 nt   +upstreamnt  +downstreamnt
atggatatagttgatataaagcttaaaattgaaaataagataatagatttaacaaaccca
gacaaactactttggcctgaagctgatattacaaaaaaacgttatgttgagacaatgact
gtattagctccatttataatcaagtattctaaaaacaggttattaaccgctataagatat
cctcacggaattggaggtaaaagcttttttcagaaagaaaagcctgacaatacaccagaa
tggataaaaactgtaaaatttaatgacaaaaactatattgtagtaaattctgctgcaact
cttatttggctatgtacacaggcagttttagagtttcatacaagctttaatgcatacaat
aatttagaccatccttcccatttggtatttgatctagacccagatgataatcaggacttt
agggaggtttcagaaattgctttaagtatatatgaaacacttgaaacattaggaataaat
ggatttgtaaaaacatcgggagcttcaggacttcaaatatatatcccaacagcatcaaaa
tatgactataattcagcaagaaaattaaatgagttttttgcacagtattttattcaaaag
ctaagcaaaaaactgaccattgagaggttgaagaagaacagggatggtaaaacatatttt
gattatatgcaaatgtggtatggtaaaacaataatagctccatattcaccaagggcagta
atgagtgctgctgtatccacacctttggaatggaaagaattgaattgggctcgtcctgag
ttgtttacactaaataatatagctgctcggcttgaacaaaaaggtgatttatttgaggca
agccttcattgtaaaaataacgagcaattagatgagattttaaaaaaactcaatacaata
aattag

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