Rhodoferax sediminis CHu59-6-5: EUB48_09140
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Entry
EUB48_09140 CDS
T06165
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhf
Rhodoferax sediminis CHu59-6-5
Pathway
rhf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EUB48_09140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhf03400
]
EUB48_09140 (mfd)
Enzymes [BR:
rhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EUB48_09140 (mfd)
DNA repair and recombination proteins [BR:
rhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EUB48_09140 (mfd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDL37417
UniProt:
A0A515DAH8
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All DBs
Position
complement(1895990..1899472)
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AA seq
1160 aa
AA seq
DB search
MDLPKLNPGKRHALPRPVGSADALLLARLAQRDKTGNRLTAIVTADANDAQRLMEEIAFF
APDLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDHDTGADVVIIPATTALYRL
APPAFLAGYTFHFKVKQKLNEARLRAQLLLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEDARAKFRSRWRELLEG
DPTKSRIYKDIGNGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDLEPAFARFWQD
TKDRYRLVQGDPEHPALAPQALFLGTEQFYARVNEHPQLAIRPAIEDVADSALFQKLGEL
SVVRGAEDPLARLKAHLRHTTQRVLLLAESDGRRESLLDFLRASQVNPPVFDSLQEFQSS
TEPLGIATGALATGFSWLEQGLDFVTETELFAAGPTTRRRKKQEQVSDVEALIKDLSELN
VGDPVVHSAHGIGRYRGLINLDLGQLQPDGTHAVQEFLHLEYADKAVLYVPVSQLHQISR
YTGVSADEAPLHKLGSGQWEKARRRAAEQVRDSAAELLNIYARRAAREGHAFRYSAQDYE
TFANDFGFEETADQSAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQ
VAFLAPTTLLAEQHYQTLVDRFAKWPVKVAQISRFRSGKEVTASTKGIADGTIDIVVGTH
KLLSESTKFKNLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLR
DLSVIATAPQRRLAIKTFVRTEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEE
LLPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKF
GLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKHASQRLEAIQQMEELGSGFYLAMHDLE
IRGAGEVLGENQSGNMMEIGFQLYNEMLGEAVRCLKAGIEPDLLAPLNATTEINLHAPAL
LPDDYCGDVHLRLSFYKKLATAKNTDQIDALLEEIVDRFGKLPTQAQTLIDVHRLRVIAR
PYGVVKVDAAPGVIHITFKKDPPIDSMRIIELIQKNRHIKLASNEKLRIERDLPDPKARA
QMVRDVLRSLGQPTTETVTA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggatttacccaaactcaaccccggcaagcggcacgccctgccccgccctgtcggttcg
gccgatgccctgctactggcccggttggcacagcgcgacaaaaccggcaacaggctcacg
gccattgtgaccgccgacgcgaacgacgcgcagcggctgatggaggagatcgccttcttc
gcgcccgatctgcgctgcgccctgtttcccgactgggaaacgctgccctacgacacgttc
tcgccgcaccaggacctgatcagcgagcggctggccaccctgtggcgcatcagccagcgc
gaccacgacaccggggccgatgtcgtcatcatccccgccaccacggcgctgtaccggctg
gcgccgcccgcgttcctcgcgggctacacctttcacttcaaggtcaagcagaaactcaac
gaggccaggctccgcgcccagctcctgcttgccggctacagccacgtcacgcaggtcgtc
agtccgggcgaatacgcggtgcgcggcggcctgatcgacctctttcccatgggctcgccg
gtcccctaccgcgtggatctgttcgacgacgagatcgactcgatccgcaccttcgacccc
gacagccagcgcagcctgtaccccgtgcccgaagtgcggctgctgcccgggcgcgagttc
ccgatggacgaggacgcccgtgccaaattccgcagccgctggcgcgagctgctggagggc
gacccgaccaagagccgcatctacaaggacatcggcaacggcgtggccacggcaggcatc
gagtactacctgccgctgtttttcgacgagaccgccaccgtgttcgactacctcggcgcg
gacgccaccgtggtgctgcacggcgacctggaacccgcctttgcgcgcttctggcaggac
acgaaggaccgctaccggctggtgcagggcgacccggagcaccctgcgctggcgccgcag
gcgctgttcctcggcaccgagcagttttatgcgcgcgtcaacgaacacccgcagctggcg
atccgccccgccattgaagatgtggcagacagcgccctgtttcaaaaactgggcgagctg
tccgtggtgcgcggcgccgaagatccgctggcccggctcaaggctcacctgcgccacacc
actcagcgcgtgctgctgctggccgagagcgatggccggcgcgagagcctgctcgatttc
ctgcgcgccagccaggtcaacccgccggtgttcgactcgctgcaggaattccaaagcagc
accgagccgctcggtattgccacgggcgccctcgccacgggcttcagctggctcgaacaa
ggcctggacttcgtcaccgagaccgagctgttcgcggccggcccgaccacgcgccggcgc
aaaaagcaggagcaggtcagcgacgtcgaagcgctcatcaaggatctgagcgagctcaac
gtcggcgacccggtggtgcacagcgcgcacggcattggccgctaccggggtctgatcaat
ctcgatctggggcagctgcaacccgacggcacgcacgccgtgcaggagtttttgcacctc
gagtacgccgacaaggcggtgctgtacgtgcccgtcagccagttgcaccagatcagccgc
tacaccggcgtgagtgccgacgaggcgccgctgcacaagctcggctccggccagtgggaa
aaagccaggcgccgcgccgccgagcaggtgcgcgactcggccgccgagctgctcaacatc
tatgcgcgccgcgcggcgcgcgaaggccacgcgtttagatacagcgcgcaggattacgaa
acgtttgccaacgacttcggcttcgaggaaaccgccgaccagagcgccgccatccacgcc
gtgatccaggacatgatcagtccacgcccgatggaccgcctggtctgcggtgatgtcggc
ttcggcaagaccgaggtggccttgcgcgccgcgttcattgccatcaccggcggcaagcag
gtggcgttcctggcccccaccacgctgctggccgagcagcactaccagacgctggtggac
cgtttcgccaaatggccagtgaaggtggcgcaaatctcgcgctttcgctccggcaaggaa
gtcacggcgtcgaccaaaggcatcgccgacggcacgatcgacatcgtggtcggcacccac
aagctgctcagcgaatcgacgaaattcaagaatctcggcctgctgatcatcgacgaggag
caccgcttcggcgtgcgccacaaggaggccatgaaggcgctgcgcgccgaggtcgacgtg
ctcacgctgaccgccacgccgatcccgcgcacgctgggcatggcgctggaaggcctgcgc
gacctctcggtgatcgccactgcgccgcagcgtcgcctggcgatcaagacttttgtgcgc
acggaaggcaacggcgtgatccgcgaggccgtgctgcgcgaactcaagcgcggcgggcag
gtgtacttcctgcacaacgaggtggaaaccatcgagaaccgccggcaaaagctggaggaa
ttgctgcccgaggcgcgcattgcggtggcgcacggccagatgcccgagcgcgagctggag
cgcgtgatgcgcgacttcgtggcgcagcgctacaacctgctgctgtgctcgaccattatc
gagaccggcatcgacgtgcctaccgccaacaccatcgtgatgagccgtgccgacaagttc
ggcctggcgcaactgcaccagttgcgcggccgggtcggacgctcgcaccaccaggcctac
gcctacctgatggtgcccgacctggagggcctgaccaagcatgcgtcgcagcggttggag
gccatccagcagatggaagaactgggcagcggcttttacctcgcgatgcacgacctggag
atccgcggcgccggcgaggtgctgggcgaaaaccagagcggcaacatgatggagatcggc
ttccagctctacaacgagatgctgggcgaggccgtgcgctgcctcaaggccggcatcgaa
cccgatctgctggcgccgctcaacgcgaccaccgagatcaacctgcacgcgccggcgctc
ttgcccgacgactactgcggcgacgtgcacctgcgcctgagtttctacaagaagctggct
accgccaaaaacaccgaccagatcgacgccctgctggaagaaattgtggatcgctttggc
aagctccccacgcaggcgcaaaccctcatcgacgtgcaccgcctgcgcgtgatcgccagg
ccctacggcgtggtgaaagtcgacgcggcgccgggggtgatccacatcaccttcaagaag
gacccgccgatcgactcgatgcgcatcatcgagctgatccagaagaaccgccacatcaaa
ctcgccagcaacgaaaagctgcgcatcgagcgcgacctgcccgatcccaaggcccgcgcc
cagatggtgcgcgatgtgctgcgctcgctgggccaacccactaccgaaactgtgaccgca
tga
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