Sinorhizobium fredii NGR234: NGR_c27850
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Entry
NGR_c27850 CDS
T00888
Name
(GenBank) putative ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NGR_c27850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c27850
Enzymes [BR:
rhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NGR_c27850
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NGR_c27850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACP26532
UniProt:
C3MIG9
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All DBs
Position
2901362..2903959
Genome browser
AA seq
865 aa
AA seq
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MAARSAPLSEYNRRRDFTKTREPKGAVAPASGDRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAIRTEDHPLAYGDFEGTIPEGEYGGGTVMLWDTGWWEPEGDPS
KGLKKGKLSFRLHGSRMKGGWALVRMRPRDGEKRENWLLVKETDEIASEEGESLIKENVT
SVATGRTMDEIAGGKGEKRARVWHSNKSTAANLKAGAIAGNDNPRKRQARKSSGKLPAFK
APQLATLVTKAPAGETWLNEAKFDGYRLICAIGGGAVRCYTRNGLDWTEKFPAIAAALAE
LDCKSALIDGEVVALSDAGSSFSALQKALKTGASTRLYAFDLIELDGKDLGRAPLIDRKE
KLRGLLDSLGTTATVQYSEHVQGNGEHVLAAICKAGQEGIIAKEAKAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSSKKGRPFASILVGTFEGGKLIYRGGVGTGFGEKVMEELAAAFAK
RSRETPPFDSVPRERMRKAVWLKPDLVAEVDFAEFTADGHVRHGSFEGLREDKEAKAVKL
ETAKPTGAASKAAKGKPSANTGKASSPKGDTDVLGVQISHPDRILFEGQGITKIDLARYY
AVVADRMLTFAADHPVSLVRCPQGGQRHCFFQKHTNDAFPEAIREVPITESSGETENYMY
VHDAKGLVAAVQMGTLEFHIWGATIDKLETPDRLVFDFDPDPSVDFTTVKNAARALRDEL
ADIGLQSFALVTGGKGVHVVVPLVRRASWDDAKSFAKAVAQNIADRDPDHFVATMSKAKR
KGRIFIDWLRNERGATAIAPYSSRAREGGPIATPVGWDELERLSGANTFRIGDILERIEA
DTDPWRDIGKVKQSLTKKMMDSVIK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgaagtgcaccgctttccgaatacaatcgacgccgcgattttaccaagacg
cgcgaaccgaagggcgcggtcgccccggcaagcggcgacaggaagcgctttctcgtccag
aagcacgacgcgacccggctgcattacgatttccgtctcgaatgggaaggcgtcctgaag
agctgggcggtcacccgcggtccaagcctcaatccggaggacaagcgcctcgccatccgt
accgaggatcaccccctcgcctatggcgacttcgagggcacgatcccggaaggagagtat
ggcggcggcacggtgatgctctgggacaccggctggtgggagccggaaggtgacccgtcg
aaaggtctgaagaagggcaagctttcgttcaggctgcatggcagccggatgaagggcggc
tgggcgctggtgcgcatgcggccgcgcgacggcgagaagcgcgaaaactggctgctcgtc
aaggagacggacgagatagcctccgaggaaggcgagagcctgatcaaggagaacgtcacc
agcgtggcgaccggccgcacgatggacgagattgccggcggcaagggtgaaaaacgggca
cgcgtctggcattccaacaaaagcacggccgccaatctgaaggccggtgcgatcgccggg
aacgacaaccctcgcaagcgtcaggcacgaaaatcctcgggcaagctgcccgccttcaag
gctccgcagctcgccacgctggtgaccaaagcacccgccggcgaaacgtggctgaacgaa
gccaagttcgacggttaccgcctgatatgcgccatcggtggcggcgctgtccgctgctac
acccgcaatggcctcgactggaccgagaagttcccggcgattgcggccgcccttgccgag
ctcgattgcaaatccgccctgatcgacggcgaggtggtggcgctgtcggacgcgggatca
agcttttcggcgctgcagaaggcgctgaagaccggcgccagcacgaggctctacgccttc
gacctcatcgaactcgacggaaaggacctcggccgcgcgccgctcatcgaccggaaggaa
aagctgagaggtctgctcgactcgctcggtaccacggcgaccgtccagtacagcgagcac
gttcagggcaacggggagcatgtgcttgcggcgatatgcaaggccggccaggagggtatc
atcgccaaggaagcgaaggcgccctatcgcagcggccgcacccgaagctggctcaaggtc
aaatgcaccaagcgtcaggagttcgtcatcggcggctatacaccctcatcgaagaaaggg
cggccgttcgcctccattctcgtcggtactttcgagggcggcaaattgatctatcggggc
ggcgtcggtaccggcttcggcgaaaaggtgatggaggaactcgctgccgcctttgcaaag
cgcagccgcgagacgccgccgttcgacagcgtgccacgagaaagaatgcgaaaagcggtc
tggctgaagccggatctggtggcggaagtggatttcgccgaattcaccgccgacggacat
gtccgccacggctcgttcgagggattgcgcgaggacaaggaggccaaggccgtgaaactg
gaaacagcgaaaccgacaggcgccgcgtcgaaagccgcgaagggcaagccctcggccaat
accggcaaggcgtcgtcgcccaagggcgacaccgatgtcctcggcgtccagatctcgcat
cccgaccgcatcctcttcgaaggtcagggtatcaccaagatcgatcttgcccgctactac
gccgtcgtcgccgacaggatgctgaccttcgccgccgaccatcccgtctcactggtccgc
tgcccccagggcgggcagcggcactgcttcttccagaaacatacgaacgacgctttcccg
gaggcgatccgcgaagtgccgatcaccgagtcctcgggcgaaaccgaaaactacatgtat
gtccatgacgccaagggcctcgtcgccgccgtgcagatgggcacgctcgagttccacatc
tggggcgcgacgatcgacaagctggaaacgcctgaccggttggtcttcgatttcgacccc
gatccgagcgtcgacttcacgaccgtgaagaacgccgcccgcgccctgcgcgacgagctg
gcggacatcggtctgcagtccttcgcgctggtgaccggcggcaaaggcgttcacgtcgtc
gtgccgcttgtccggcgagccagttgggacgacgcgaagagtttcgccaaggccgtggcg
cagaacatcgccgatcgcgatcccgatcatttcgttgccaccatgtcgaaggcgaagcgc
aaggggcggatcttcatcgactggctgagaaacgagcgtggcgccacggcgatcgccccc
tattccagccgcgcccgcgaaggcgggccgatcgccacgccggtcggttgggacgagttg
gaacggctgagcggggccaacaccttccgcatcggcgatatcctcgagcgcatcgaagcg
gacaccgacccgtggcgcgatatcggcaaggtcaagcaatcgctgacaaagaagatgatg
gattcggtcataaaatag
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