Rhizobium hidalgonense: FFM81_029625
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Entry
FFM81_029625 CDS
T07043
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhid
Rhizobium hidalgonense
Pathway
rhid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FFM81_029625 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhid03400
]
FFM81_029625 (ligD)
Enzymes [BR:
rhid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FFM81_029625 (ligD)
DNA repair and recombination proteins [BR:
rhid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FFM81_029625 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKK27493
LinkDB
All DBs
Position
pPR19E02:complement(164389..167037)
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AA seq
882 aa
AA seq
DB search
MASDNLSTYRSKRDFQKTAEPSGDKQIARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVDENGEAILEDN
DTSVASGRTMEAIAAGKGRKPKPFMMKGGDIKADAVWDSNHGLAAEERKETGRAGRKPKA
ARVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRTLEGEVTLKTRKGLDWTGKY
PEIAEAASALPDAIIDGEICALDDHGAPDFAALQAAISEGRTGDLVYFAFDLLYEGGEDL
RSLPVVERKARLQSLLADAGDDPRLRFVEHFETGGDAVLRSACKLSLEGIVSKQVDAPYQ
SGRADSWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVET
LLPKLQALEAAKSPFTGIGAPKKEAEVTWLKPKLVAEIEFAGWTADGIVRQAAFKGLRED
KPAREVKAERPAKPAETEVPEPAAEAEVKARPARRKGAKTEVMGVMISNPDKPLWPDAND
RRPVTKEELARYYEAVGGWMIAHIEGRPCSIIRAPDGLGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCQPHKPEVPGRLVFDLDPGPDVPFSTVV
SAAREMRDRLDALGLISFCKTTGGKGLHVVTPLAINKRKPLSWAEAKSFAHDVCQQMARD
NPDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDP
KRFTIRTVPALLSKSPAWEDYCDGERPLEQAIKRLGKASAAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaacctgtcgacatatcgctcgaagcgcgattttcaaaagacggcggag
ccgagcggcgacaagcagatcgcgcgcagcaatcgccgtcgcttcgtcatccagaaacac
gacgccacccgactgcattacgacctgcggctcgaactcgacggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtcgctcgatccgcacgacaagcggctggccgtcgaggtggaa
gatcacccactcgattatggcgacttcgaaggcacgatcccgaaaggccagtatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcccgagggaaagaagagcccggag
caggcgcttgccaagggcgacttcaagttcacgctggaaggcgaacggctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcgacggcggcaaacggaccaactggctgctg
atcaaacatcacgacgcgttctcggtcgacgaaaatggcgaagcgatcctggaggacaac
gatacctcggttgcctccggccggacgatggaggcgattgccgccggcaagggccgcaag
ccgaagccgttcatgatgaaaggcggcgatatcaaggccgatgccgtctgggacagcaac
cacgggctggccgccgaagagaggaaagagacgggccgagccggcaggaagccgaaagcg
gcaagggtcgacctcccggatttcatcgcgccgcagctttgccagaccctggagcggccg
ccggccggcgagggctggattcacgagatcaaattcgatggctaccggatccagatgcgg
acgctcgagggcgaggtgacgctgaagacgcggaaggggctcgactggaccggtaaatat
ccggagatcgccgaggcggcatcggcactacccgacgccattatcgacggcgagatctgt
gctctcgacgaccatggcgcaccggatttcgcagccctgcaggccgccatttcggaaggc
aggaccggcgatctcgtctatttcgccttcgatcttctttacgagggtggcgaggacttg
cggtcgttgccggtcgtggagcgcaaggcccggcttcaaagcttgctggcggatgccggt
gatgaccctcggctccgtttcgtcgagcatttcgagaccggcggcgatgcggtccttcgc
tccgcctgcaagctctcactggaaggcatcgtctccaaacaggtcgatgctccctatcaa
tccggccgcgccgacagctgggccaagtcgaaatgccgcgccggccacgaagtggtgatc
ggcgcctatgccaagaccaacggcaaattccgctccctgctggtcggcgtctaccgcggc
gaccacttcgtctatgtcggccgcgtcggcaccggatatggcgcgaagaaagtggaaacg
ctgctgccgaaactgcaggcgctcgaggcggcaaaatcgcccttcaccggcatcggtgcg
ccgaagaaggaggccgaggtcacctggctgaagcccaagctggtggcggaaatcgagttc
gcaggctggaccgccgacggcatcgtccgccaggcggccttcaagggcctgcgggaggac
aagccggccagagaggtcaaggccgaacggccggccaagcccgctgagaccgaggtaccg
gagccggcggcggaggcggaggtgaaggcgaggcccgctcgccgtaaaggcgccaaaacc
gaggtgatgggggtgatgatctccaatccggacaagccgctgtggccggatgccaatgac
cgcaggccggtgaccaaggaagagctggcgcgctattatgaagccgtcggcggctggatg
atcgcgcatatcgaagggcgtccctgttcgatcatccgtgcgcccgatgggctcggcggc
gagcagttcttccagcgccatgccatgcccggcacctcgaacctcctcgaactggtcaag
gtcttcggcgacaaaaagccctacctgcagatcgacagggtcgagggtctggctgctgtc
gcgcagatcggcgctgtcgaattgcacccctggaattgccaaccgcacaagccggaggtg
ccgggccggctggtgttcgacctcgaccccggccccgacgtgccgttctcgacggtcgtt
tccgccgcccgcgaaatgcgcgatcgtctcgacgcactgggcctgatcagcttctgcaag
acaaccggcggcaagggcctgcacgttgtcacgccgcttgcgatcaacaaacgcaagccg
ctttcctgggctgaggcgaagagcttcgcgcacgacgtctgccagcagatggcgcgcgac
aatcccgatctttatctgatcaagatgaccaagagcctgaggaacggccgcatcttcctc
gactatctccgcaacgaccggatggctacggccgtggcacccttgtccccacgggcccgg
ccaggcgccacggtctcgatgccgctgacctggacccaggtcaaatcggatctcgacccg
aaacgcttcaccatccgcaccgtgccggcactgctgtcgaaatcgccagcctgggaggat
tactgcgatggcgagcgtccgctggagcaagcgatcaaacgcctcggcaaagcatccgcg
gcggcttga
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