Rhizobium sp. Kim5: Kim5_CH02292
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Entry
Kim5_CH02292 CDS
T05501
Name
(GenBank) DEAD/DEAH box type DNA/RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kim5_CH02292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhk03019
]
Kim5_CH02292
03009 Ribosome biogenesis [BR:
rhk03009
]
Kim5_CH02292
Enzymes [BR:
rhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kim5_CH02292
Messenger RNA biogenesis [BR:
rhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kim5_CH02292
Ribosome biogenesis [BR:
rhk03009
]
Prokaryotic type
rRNA helicases
Kim5_CH02292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARQ58344
LinkDB
All DBs
Position
complement(2300964..2302931)
Genome browser
AA seq
655 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP
TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS
LERGAHIVVGTPGRLCDHIRRNALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDERSRKRRDNAEPYAPAQKGPREDFGPSVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIATASADSFQEALGPNKTLERGIRVT
RLSGTPDFSRAAAPKPYAGKSRDERPGEGFRDERPKNKFGKGPGGGYAAVENAGGEKRDS
KPWSKKPGKPGFDGPKGDKPRYDKPKFEGAKSERPKYEGKGGAGAKSKFSKKKPG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcaccccggtgcagaagtcgatgctcgatcctgatcttgccgcatccgacgct
ctggtttccgcccagaccggttccggcaagaccgtcgccttcgggctggcgctggcgccg
acgctgctcgagggtagggaacgcttcggcaatgccggcgctccgctcgccctcgttatc
gccccgacccgcgagcttgccctgcaggttaagcgcgagctcgaatggctctatgagatg
accggcgcggtgatcgccagctgcgtcggcggcatggacatccgcagtgagcgccgttcg
ctcgaacgcggcgcccatatcgtcgtcggcacgccgggccggctctgcgatcatatccgc
cgcaacgcgctcgacatgtcggaactgaaggccgccgtgctcgacgaggccgacgagatg
ctcgatctcggcttccgcgaagatctggaattcattctcgattcggcgccggacgaacgc
cggacgctgatgttttcggcaaccgtgccggcggcgatcgccaagcttgccaagagctac
cagcgcgacgcggtgcgcatcagcaccgccgccgaggaaaagcagcatatcgacatcgaa
tatcgcgcgctgatggtggccccgagcgaccgcgagaacgcgatcattaacgtgctgcgt
tattacgaggcgaccaatgccatcgtcttctgttcgacgcgcgccgccgtcaaccatctg
accgcgcgtttcaacaaccgcaatttcgccgtggtggcgctctccggcgagctgacgcag
aacgaacgcagccatgcgctgcaggcgatgcgcgacgggcgcgcccgcgtctgcatcgca
accgatgtcgccgcccgcggcatcgatctgccgggcctcgatctcgttatccacgccgac
ctgccgaccaatccggaaacgctgctgcaccgcagcggccgcaccggccgggccgggcgc
aaaggcatcagcgccatgatcgtgccgctgaatgcacggcgcaaggccgagcgtctgctg
gagaatgccggcatttccgcggcctgggcacggccgccgtcggccgaagaggtgaatgag
cgcgacgacgagcggctgctcgccgatccgatcttcagcgaagcgccgcaggaagaagaa
caggggctggtgcagcagctgctttccagccacggcgccgagaagctcgccgccgccttc
ctgcgtctctaccgcaccaatcattcggcgccggaggacctgatcgaggtcaccgtgcag
gatgagcgcagccgcaagcgccgcgacaatgccgagccatacgcgccggcacaaaaggga
ccgcgcgaggatttcggccccagcgtgtggttctccgtctcggtcgggcgcaagcagaat
gccgagccgcgctggctgatcccgatgctttgccgcaacggcaacgtgacgaagcgcgag
atcggcgcaatcaagatgcagcctgaggaaacctatgtcgagattgccacggcaagcgcc
gacagtttccaggaagcgctggggccgaacaagacgctcgaacgcggcatccgcgtgacc
aggctttccggcacgccggatttcagccgcgcggcggcgccgaagccctatgccggcaag
tcgcgtgacgaacggccgggcgagggcttccgcgatgagcggccgaagaataagttcggc
aaaggcccgggcggcggatatgccgcggttgagaatgccggcggggagaagcgggacagc
aagccctggagcaagaaaccaggcaagcccggcttcgatggcccgaaaggcgataagccg
agatatgacaagccgaaattcgaaggcgccaaatctgaacgcccgaaatacgagggcaag
ggcggcgccggggcgaaaagcaagttttcgaagaagaagcccggctga
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