Rhizobium sp. Kim5: Kim5_PC00578
Help
Entry
Kim5_PC00578 CDS
T05501
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhk
Rhizobium sp. Kim5
Pathway
rhk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Kim5_PC00578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhk03400
]
Kim5_PC00578
Enzymes [BR:
rhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Kim5_PC00578
DNA repair and recombination proteins [BR:
rhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Kim5_PC00578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ARQ61988
LinkDB
All DBs
Position
pRetKim5c:complement(634181..636817)
Genome browser
AA seq
878 aa
AA seq
DB search
MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHHDEHSVEENGAAILEENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKSPKDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKP
AKEVEAEKPALPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHETVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLTANKRKALSWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWAQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRHAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgat
gcgacacggcttcactatgacctcaggctcgagctcgatggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaaacggctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggtacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttactgggagccggaaggccgcaagtctccggaagag
gctttgaggaaaggcgacttcaagttcacgcttgaaggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtaatgaccgcgatggcggcaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcggtcgaggaaaacggtgcggcgatcctggaggagaatgcg
acctccgtcgcatccggccgcagcatggatgagatcgccgaaggcaagggccgcaagccg
cgacctttcatgatggcgaaggcggacgtcgaggcggacgccgtgtgggacagcaagcat
ggtctggccgccgacgagcgcaagaagaagtctcctaaggatgtcgcaacctccacggcg
gccgacctgccagatttcatcgagccgcagctttgcgataggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaagggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgaaaggagcggctgcaaaaccttctcaccgctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaaaggcctgcgcgaggacaagccg
gcgaaagaggtcgaggccgaaaagccggcgctgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttccaatcccgacaagccgctgtggccggacgccggtgatggtgagcccgtc
acaaaggaggaccttgcgcgctatcatgagaccgtcggtgcttggcttatcgagcatatc
aagggccgaccatgctcgatcattcgagcacccgacggcattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctgctcgaattggtgaaggttttcggggac
aagaagccttacctgcagatcgatcggatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccagcccggcaagccggaagtacccggccgtctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagaccaccggtggc
aagggcttgcatgtcgtgaccccgctgaccgccaacaaacgcaaagccttgtcatgggcc
gaagccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatccagacctc
tacctgatcaagatgaccaagagtctccgtggcggcaggatcttcctcgattacctccgc
aacgatcgcatggcgacggccgttgcgccgctctccccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggcgcaggtgaagtccgatctcgacccgaagcgttttacg
cttcgaacggtgccggcgcttctgaccaaaagctccgcctggcaagactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcccgacacgcagcgtga
DBGET
integrated database retrieval system
