Rhizobium favelukesii: LPU83_pLPU83d1032
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Entry
LPU83_pLPU83d1032 CDS
T03046
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhl
Rhizobium favelukesii
Pathway
rhl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LPU83_pLPU83d1032 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhl03400
]
LPU83_pLPU83d1032 (ligD)
Enzymes [BR:
rhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LPU83_pLPU83d1032 (ligD)
DNA repair and recombination proteins [BR:
rhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LPU83_pLPU83d1032 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
LinkDB
All DBs
Position
pLPU83d:1027534..1030173
Genome browser
AA seq
879 aa
AA seq
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MATDTLSKYRAKRDFQKTSEPSGDTPIEKASRRRFVIQKHAASRLHYDLRLEVRGVFKSW
AVTKGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMVWDRGYWEPEGQKGPE
RALEKGELKFRLDGQRLQGSFVLVRMRNDRDRGNRSNWLLIKHRDAFALEDHGSDIVEEN
QTSVASGRTMEAIASGKGRQPAAFIVKGGKVRADAVWGSDGGAPADPRRSKRQNAKRPTE
DAPAELPDFIAPQLCETVERPPSGADWVHEIKFDGYRVQMRVFDNEVTLKTRKGLDWTAK
FTEIADGASALPDAILDGEICALDEQGAPDFAALQAALSERKTGDLVFFAFDLLFDRNED
LRARPLSDRKDRLATLLNNAPSNPRIRFVEHFETGGDAVLKSACKLSLEGIVSKRADAPY
QSGRTHTWAKSKCRAGHEVVIGGYARINGRFRSLLVGVYRKDHLIYVGRVGTGFAAKKLE
GLLPELEALETARSSFTGTGSPRQDRDVVWVKPELVAEIEFAGWTADGLVRQAAFKALRK
DKPASEVEVDLPAPAAGTVTPEPGPAARQGRGKNAKVEVMGVLISSPDKPLWPDANDDGP
VTKEELARYYEAVGAWLIRHIAGRPCSIIRAPDGINGEQFFQRHAMQGTSNLLELVEVFG
DRKPYLQIDRLEGLSAVAQIAAVELHPWNCQPGKPEVPGRLVFDLDPGPDVAFSTVVAAA
REMKDRLEELGLVSFCKTTGGKGLHVVTPLAATKRKALSWPQAKAFAYDVCRQMARDNPD
LYLVKMTKSLRTGRIFLDYLRNDRMSTAVAPLSPRARAGATVSMPLTWAQVKADLDPRRF
TVRTAPRLLTKTSAWEDYCDCERPLEQAIKRLGKTRNLA
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggccactgacacgttatcgaagtatcgagccaaaagagacttccaaaagacttcggag
ccgagtggcgacacgccgattgaaaaggccagccgccgacgctttgtcattcaaaagcac
gccgcctcccgcctgcactacgatctcaggctcgaagttcgcggcgtcttcaaatcctgg
gcggtcaccaaagggccgtcgcttgatccgcgtgacaagcgccttgcggttgaggtcgag
gatcatccgctcgactacggcgacttcgaaggcacgatccccaagggccagtatggtggc
ggcacggtcatggtgtgggaccgcggctactgggaaccggaggggcaaaaagggccagag
cgggcgctggaaaagggcgagttgaagttcaggctcgatggccaacgcctgcaaggaagc
ttcgttctcgtgcgcatgcgcaacgatcgagatcggggcaaccgttcgaactggctgctg
atcaaacatcgtgacgcgtttgctctggaagaccatggctccgacattgtggaggagaac
cagacttcggtggcatcgggcagaaccatggaagcgattgcctcgggcaaaggtcgacaa
ccggccgcattcatcgtcaaaggaggaaaagtgcgcgccgacgccgtgtggggaagcgat
ggcggcgcgcctgcagaccctcgcagatccaagaggcaaaacgccaagcggccaacagag
gatgcgcccgccgaactgccggactttattgcgccgcagctctgtgagacggtggaacgc
ccgccgtctggagccgattgggtccatgaaatcaaattcgacggctacagggtgcagatg
cgggtgtttgataacgaggtcacgctgaagacgaggaaaggattagattggacagcaaag
ttcaccgaaatagcggatggcgcctcggctcttccagatgccattttagacggcgagatc
tgtgcgctggatgaacagggcgcgccagatttcgccgcacttcaagccgcgctttccgaa
cgcaagaccggagatcttgttttcttcgcattcgatctgcttttcgaccgcaacgaagac
cttcgcgcgcggccactgagcgacagaaaagatcgtctcgccaccctcttgaataacgct
ccgagcaatccccggatccgttttgtggagcatttcgagaccggaggcgacgctgtattg
aagtctgcctgcaagctgtcactcgaaggcatcgtctcgaaacgggccgacgcaccgtat
caatcagggcgcacccatacgtgggccaaatcgaaatgtcgtgccgggcatgaggtcgtt
atcggcggctatgcaaggatcaacggcaggttcagatcgctactggtcggtgtttatcgc
aaagaccatctaatctatgtcggtcgcgtgggaaccggctttgcagcaaagaagctcgaa
gggctattgccggagctcgaggcgttggagacggcccgctcgagctttaccggcaccgga
tcgccgaggcaagatcgcgatgtcgtatgggtcaagcccgagcttgttgccgagattgaa
ttcgccggatggacggcagacggcctcgtgcgtcaggcagccttcaaggctctgcgcaaa
gacaagcctgcgagcgaagtcgaagtcgatctgccagccccggccgctggtacggtcaca
ccagagcctgggcccgccgccagacagggtcgcgggaaaaacgccaaggtcgaggtgatg
ggcgtgctgatttccagtcccgacaagccgctctggcctgatgccaacgacgatggcccc
gtgaccaaggaagagctggctcgctactacgaggcggtcggtgcgtggctcatcaggcat
attgccggtcgaccatgctccatcatccgtgcgccagatggcataaacggcgagcagttc
tttcagcggcacgccatgcagggcacgtcgaacctcctggagctggtcgaggtattcggc
gacaggaagccctatctccagattgatcgcctggagggattgtcggccgtcgcccagatt
gccgctgtcgaactccacccctggaattgccaaccgggtaagccggaagtcccgggacga
ttggtcttcgacctcgatccgggacctgacgtcgcgttctcgactgtcgttgccgccgcc
cgggaaatgaaggacaggctcgaggaactgggcctggtgagcttctgcaagaccaccgga
ggcaaggggctgcatgtcgtcacaccgcttgccgcgaccaagcgaaaggctctctcatgg
ccgcaagcaaaggcctttgcatatgatgtatgccggcaaatggcgcgcgacaatccggat
ctctatctggtgaaaatgacgaaaagcctgaggaccggtcgaattttcctcgactacctg
cgcaacgatcgcatgtccaccgcggttgctcccttgtcgccacgagccagggccggcgcc
acggtatcgatgccgctcacctgggcacaggtgaaggccgatctcgatcccagacgcttc
accgttcgaacggcaccgcgcctgctgacgaagacatcagcatgggaggattactgcgat
tgcgagcggccgctggagcaagccataaagcggctcggcaaaacccggaatttggcgtga
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