Rhodococcus sp. 008: AOT96_02785
Help
Entry
AOT96_02785 CDS
T05462
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhod
Rhodococcus sp. 008
Pathway
rhod03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOT96_02785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhod03400
]
AOT96_02785
Enzymes [BR:
rhod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOT96_02785
DNA repair and recombination proteins [BR:
rhod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOT96_02785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANQ74693
LinkDB
All DBs
Position
complement(608954..611236)
Genome browser
AA seq
760 aa
AA seq
DB search
MATTDRGQITLDGTTVSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLTECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTL
THYRNKRSADRTPEPIPAAVTKETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GKRVQGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDSQEWAFEG
KWDGIRVILEYHSGTMSLRSRAGNDKTGDYPSLAGLAEVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLATLEPLRQKESPFGEELPADDRKGAVWVRP
ELVGEVRFMDWTKTERLRHPSWRGLREDKKPGDVVRETVQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacggatcggggtcagatcactctcgacggcacaaccgtgtccgtgaccaat
ctgggcaagatcctctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccacatgtcgtcggtagaccgggcactcgtaagcgt
tggcccaacggtgtggacggtcagtccttcttcgagaagaacctggcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcaacattctgatcgcgtcgtcacttacccgatcttc
gattccgttgcatccctggcgtggctggggcaacaggcggcactcgaattacacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggcgaaggcgtcggattgaccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggactgcctatccggtaaccagtggtagcaagggaattcacctc
tacgttccactggatcgagccttggacggcagcggtgcgtcgactgtcgccaagcagatc
gccaccggactcgagaagcttcacccggatctcgtcaccgcgacgatggctcgaaatgtg
cgggcaggcaagattttcgtggactggagtcagaacaacgcagccaagacaaccattgcg
ccgtactcgatgcgcggtcgcgatcaaccctatgttgccgcgccgcgcagttgggacgaa
ctcgacgatccgaaactacgacatctgttgttcgacgaggttctggagcgcgtcgaatcc
gatggtgatctgctgggcgatctggatccgccggtctcggcggctgtagccgacacgttg
acgcactatcgcaacaagcggtcggccgaccggacgccggagccgatccctgctgcggtg
accaaggagacagcgggcaatacctttgtgattcaggaacatcacgccagacgattgcat
tacgacgttcgcctggagcgggatggtgtgctcgtgtcctgggctgttccgaagggcgtg
ccgaccagtgccggagagaatcggttggccgtgcacaccgaggatcacccgctcgagtac
gccacgttctcgggcacgatcccgaagggggagtacggcggcggttcgatgacgatctgg
gattccgggacgtacgagaccgagaagtggcgtgaagacgaggtgatcgtgcgcctcagt
gggaaacgggtgcagggacgcttcgcgctgatccggacgaagggtgaccagtggttgatg
catctgatgaaggatcagaacgcgagtttcggaacggagtttcccaagaatctcgagccg
atgcttgccaccgctggaacgctcgaaggtctcgactcgcaggagtgggctttcgaagga
aagtgggacgggatccgagtgattctcgaatatcattcgggcacaatgtcacttcgcagt
cgcgcgggtaacgacaagaccggggactatccctcccttgccgggttggccgaggtgctg
gacggtcatgacgtggttctcgacggtgaagtggtggcgtacaacgacgcgggggtcacc
gatttcggtcttctccagcgaggtggggagccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaaatcctactcggaccggcgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtacctccacagatcgagggcacggcggagaac
gcgttggaggtgagtaccgatgccggatgggaagggattgtcgccaaacgtcgtgcatcg
gtctaccttccggggcggcgtgggtcgagttggatcaaggtgaagaactggcgcactcaa
gaggtggtgatcggagggtggcgcaccgggcagggcaatcgagcacaggggatcggggcg
ctgctcatgggaattccgggtgaggatggattgacctacgttgggcgcgtcggtaccggc
ttcagtgatcgcgacttggagtctttacttgcgacactggaaccgctgcgtcagaaggaa
agtccgttcggggaggaacttccagcagatgaccgcaagggtgcggtgtgggtgaggccg
gaactcgtcggtgaggtgcggttcatggattggacgaagaccgagcgtctgcgtcatccg
agttggcgaggtctgcgggaggacaagaaaccgggcgacgtggtgcgggaaacagtgcaa
tga
DBGET
integrated database retrieval system
