Rhodococcus sp. P1Y: D8W71_11120
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Entry
D8W71_11120 CDS
T09477
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhop
Rhodococcus sp. P1Y
Pathway
rhop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D8W71_11120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhop03400
]
D8W71_11120 (mfd)
Enzymes [BR:
rhop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D8W71_11120 (mfd)
DNA repair and recombination proteins [BR:
rhop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D8W71_11120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
DUF3638
IstB_IS21
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AYJ48791
UniProt:
A0A494STW4
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All DBs
Position
2362295..2365933
Genome browser
AA seq
1212 aa
AA seq
DB search
MSSDSSLHLSGLARVALSDSSLTSVTEAVGAAERTLVAPNSSRPFVAAAIAQRAQVLVVT
ATGREADDLTTELQQILGDTVVQFPSWETLPHERLSPSADTVGRRLEVLRRLARPDDTDY
GPTLQVIVTTVRSLVQPMAPGLGEIEPIGLKVGVEIDFDGLIHRLVELAYTRVDMVGKRG
EFAVRGGILDIFSPTADHPVRVEFWGDEVTELRAFSVSDQRSIPDIDITSVIAPPCRELI
LTQTVRDRAAILAGDNQADAALVEMLDKLSAGIPVEGMEALLPLLQPGELQLLADVLPAG
AHVLLCDPERIRTRATDLVRTGQEFLEASWTAASVGGAAPLDTATVNTDSLGGVSLDLGA
SAYRSLRQIRESAQALGRPWWTISPLASGSETEVELAVESVPEVRGSEELLTGVFAMLRA
HVSTGGRAVIAVAGAGTATRIIERLGEAEVPATHIESGAEPLPDVVSVLCGSLHEGLILR
DAGLVVVTESDLTGNRVSATEGRKLPAKRRNQVDPLALVAGDSVVHDQHGIGRFVEMIER
TVGGARREYLVIEYAPSKRGQPGDRLFVPMDSLDQLSRYVGGELPSLSKLGGSDWANTKR
KARKAVREIAGELVQLYAARQAAPGHAFAPDTPWQLEMEDAFGFTETMDQMTAITEVKAD
MEKPVPMDRVILGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTARMAS
FPVTVRGLSRFTHGADSKQVMAGLADGTVDIVVGTHRLLQTGVTWKDLGLVIVDEEQRFG
VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIRELSTILTPPEERHPVLTYVGAYND
KQVAAAIRRELLRDGQVFFVHNRVSSIDKAAKKIRDLVPEARVATAHGQMNEETLERTVS
GFWERETDVLVCTTIIETGLDISNANTLIVERSDSLGLSQLHQLRGRVGRSRERGYAYFL
YPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLY
VRLVGEAVEAYRAVMDGKPITTDEAPKEVRIDLPVDAHIPPDYVTSDRLRLEAYRKLAAA
VDSDGITAVIDEMVDRYGPLPEEVGRLVSVAKLRLIAKEYGLTDVNVSGTQIKLAPMDLP
DSKQIRLKRLYPNAAYRATTGVVQLPLPRVEGGGVGAARVRDVELIQYIADLMLSLDGKP
SRSVLLEQTVGV
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccgattcctcgcttcacctgtcgggccttgcgcgcgtagcactgtcggactct
tcgctgacatcggtgacggaggctgttggagccgccgagcgcaccctcgtggcaccgaat
tcatcccggccattcgtcgcggcggccatcgcgcagcgcgcccaggttctcgtcgtcaca
gccacgggccgcgaagccgacgacctgaccacggagttgcagcagatactcggcgatacc
gtcgtacagtttccgtcgtgggagacgcttccgcacgagcgcctctcgcccagcgccgac
acggtcggccgccggttggaagtgttgcgaaggctcgcacggccggacgacacggactac
ggcccgacgcttcaggtcatcgtcaccacggtccgttcgctcgtccagccgatggcgccc
ggtctcggtgagatcgagccgatcgggctcaaggtgggcgtcgagatcgatttcgacggc
ttgatccatcgcctcgtcgagcttgcgtacacgcgggtggacatggtcggcaagcgcggc
gagttcgccgtccgaggcggcatcctcgacatcttctcgccgacggccgatcacccggtc
cgcgtcgagttctggggtgacgaggtcactgagctccgcgccttctcggtgtccgatcag
cgatcgatccccgacatcgacatcacttcggtcatcgcacctccctgccgtgaactgata
cttactcagaccgtccgcgaccgtgccgccatcctcgcgggcgacaatcaggcagacgct
gcgctcgtggaaatgctggacaagctgtcggcaggtataccggtggagggcatggaagcg
ctccttccgctgctgcagccgggtgagctacagttgctcgctgacgtgcttccggccggg
gctcacgtcctgctctgtgatccggagcgaatccgcacgcgggcaaccgatttggtgcgt
acgggtcaagagttcctcgaggcgtcgtggacggctgcgtctgtcggcggcgccgcccct
ctggacacggcgacagtcaacaccgacagcctcgggggagtaagcctggatctaggtgcg
tctgcgtatcgttcgctgcgtcaaattcgtgaatcggcccaggcactgggaaggccgtgg
tggaccatcagtccgctcgcctcggggagcgagaccgaggtcgaactcgcggtcgagtcg
gttccggaagtccggggctccgaggaattgttgaccggtgtcttcgcaatgctgcgggcc
cacgtgtccaccggcggccgtgcggtcattgcagttgcaggagcgggaaccgcgacgagg
atcatcgagcgtctcggtgaagccgaagtgcctgcgacacatatcgaatcgggggcagag
ccgctccccgacgtcgtcagcgtgctgtgcggttcgctgcacgagggtttgattctgcgc
gacgccgggctcgtcgtcgtcaccgagagtgatctcaccggcaaccgagtgtcggcgacc
gagggtcgaaagttgcccgccaagaggcgcaatcaagtcgatccgctcgcgttggtcgcc
ggcgacagcgtcgtgcacgatcaacacgggatcggtcggttcgtcgagatgatcgaacgc
accgtcggcggtgctcgtcgtgagtacttggtcatcgagtacgcgccgagcaagcgcggg
cagccgggcgaccgcttgttcgtgccgatggattcgctcgatcagctctcccgctacgtc
ggcggagaattgccctcgctgagcaaactgggtggatccgattgggcgaacaccaaacgt
aaagcgcgcaaggctgttcgggagatcgccggcgagttggtgcagctgtatgccgcacgg
caggccgcgccaggtcatgcgttcgcaccggacaccccatggcagctcgagatggaagac
gcgttcggattcaccgagaccatggaccagatgacggctatcaccgaagtcaaggccgac
atggagaaaccggtaccgatggaccgagtcatcctcggtgacgtgggctacggcaagacc
gagatcgctgtccgtgccgcattcaaggccgtccaagacggtaagcaggtcgcagtgctc
gtgccgaccacccttctggcgcaacaacatctgcagacgttcactgctcgcatggcgtcc
ttcccggtcacggtgagggggctctcgcgcttcacgcacggcgccgattcgaagcaggtc
atggcaggtctcgccgacggcaccgtcgacatcgtcgtcggcacccaccggctgttgcag
accggtgtgacgtggaaagacctcgggcttgtcatcgtcgacgaggaacagcgcttcggc
gtcgagcacaaggagcacatcaagtcgcttcgtacgcacgtcgacgtcctgacgatgtcg
gcgacgccaattcctcgtacgttggagatgagcctcgccggtatccgcgagctctccacc
atcctcaccccgcccgaggagcgtcaccctgtcctgacgtacgtcggtgcgtacaacgac
aagcaggtcgcggccgctattcgacgtgagttgttgcgggacggccaggtcttcttcgtg
cacaaccgggtcagctcgatcgacaaggcagccaaaaagattcgtgatctggtgcccgag
gctcgggtggccacggcgcacggtcagatgaacgaggagaccctcgaacgcacggtgtcg
ggattctgggagcgggagaccgacgtcctggtgtgcaccaccatcatcgagaccggtctc
gacatctccaacgccaacacgttgatcgtcgaacgcagcgattcgctcggcctgtcgcag
ctgcaccagttgcgcgggcgagtcggacgtagccgcgaacgtgggtacgcgtacttcctg
taccccgcggagaagccgctgaccgaaacggcgtacgaccggctcgcgaccatttcgcag
aactccgacctgggcgcaggtatggccgttgcaatgaaggacctcgaaatccgcggtgct
ggtaacgttctcggcgccgagcagtccggccacgtggccggcgtcgggttcgatctgtac
gttcgattggtcggcgaggcagtcgaggcgtatcgagcggtcatggacggcaagcccatc
acgacggatgaggctcccaaggaggtccgcatcgatctgccggtcgacgcccacatcccg
ccggactatgtcaccagtgatcgcctgcggctcgaggcctaccggaagctggcggccgca
gtggattcggatggcatcaccgcggtcatcgacgagatggtcgaccgctatggtccgcta
ccggaggaagtcgggcgtctcgtgtcggtggccaaactgcgactcatcgcgaaggagtac
ggcctcaccgacgtcaacgtctcgggtactcagatcaagctcgcgccgatggatctgccc
gattccaagcagatccggctaaagcggctctacccgaacgcggcctaccgtgccaccacc
ggagtggttcagctgccgctcccgcgtgtcgaaggcggtggcgtcggggctgcccgtgtg
cgcgatgtggagttgattcagtacatcgccgacctcatgctgtcgctcgacggcaagccg
tctcgttcggtgttgttggagcagactgtgggggtgtga
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