Rhodocytophaga rosea: GXP67_08250
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Entry
GXP67_08250 CDS
T06412
Name
(GenBank) 3'-phosphoesterase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhoz
Rhodocytophaga rosea
Brite
KEGG Orthology (KO) [BR:
rhoz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GXP67_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhoz03400
]
GXP67_08250
Enzymes [BR:
rhoz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GXP67_08250
DNA repair and recombination proteins [BR:
rhoz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GXP67_08250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
QHT66648
UniProt:
A0A6C0GFB5
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All DBs
Position
1961191..1961898
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AA seq
235 aa
AA seq
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MSLKNYFEKRDFTRTPEPQKGEKITGDTLHFVVQRHQASKLHYDFRLEMDGVLKSWVIPK
GPSMNPKDKRLAVMVEDHPLEYRTFEGEIPEGNYGAGIVTIWDEGTYQVAPDNEEPSDEK
TLLSQLKKGSLTFILKGKRLKGIFSLVKLQKGDPDSWLLIKKKDEEATEKAYNSEDFVKK
AAIKTTRTRKTQKKPSAGKPDPSPKVLQWEQKRQQKKQKETGMKNQKTGIAKEWK
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaaaaaactattttgaaaaacgtgatttcaccagaacgcccgaacctcagaaa
ggtgaaaaaattaccggcgatactttgcactttgtagttcaacgtcaccaggcttctaaa
ttgcattatgatttcaggctggagatggatggagtgctcaaaagctgggttatacccaaa
ggcccttctatgaacccgaaggataagcggctggcagtaatggtagaagatcatcccctg
gaataccgcacttttgaaggagaaattccggaaggcaactatggcgcaggcattgttacc
atatgggatgaaggaacttatcaggtagcacccgataatgaagaaccatccgatgaaaaa
actttgctctcacagctcaaaaagggaagcctgacatttatattgaaaggaaaacggctc
aagggtattttttctctggtaaaacttcagaaaggcgatccggattcctggctgctgatt
aagaaaaaggatgaagaagccaccgaaaaagcctataatagcgaagattttgtaaaaaaa
gccgccattaaaacaacccggaccagaaaaactcagaaaaaaccgtctgccggtaagccc
gatccatcccccaaggtcctgcaatgggaacagaagcggcagcaaaagaaacaaaaggaa
accggtatgaaaaatcaaaaaacaggcatagcgaaggagtggaagtag
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