Rhodococcus sp. p52: IM25_10870
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Entry
IM25_10870 CDS
T05434
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IM25_10870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhq03400
]
IM25_10870
Enzymes [BR:
rhq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IM25_10870
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IM25_10870
DNA repair and recombination proteins [BR:
rhq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IM25_10870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
NFACT_N
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AOD22049
UniProt:
A0A1B2UD24
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All DBs
Position
complement(2324547..2325413)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAVFLREHAVGSVIGRIDVAALNVLQTADPPITALQGRDITGAVRFGKFLA
IDCSGLHLITHLSRGGWLRWLDEPSQTPPKLGRGPLALRVHLFAPDATTPAFDLTEAGTK
KRLAVWIVDDPQQVPGIARLGPDALALTRDEFAELLTDSTSRLKTLLIDQKILAGIGNAY
SDEILHVAQQSPFATAGKLTDDAATALYGAMRSVLTDAVTRSVGQDAARLKGEKRSGLRV
HGRTGEPCPVCGDTVREVSYTDRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccccgaggtggaagcacttgcggtgttcctgcgcgagcacgcggtcggc
agcgtcatcggacgcatcgacgtcgcggcgctgaacgtgctgcagacggccgacccgccg
atcacggcgctgcagggacgcgacatcaccggagcggtgcgcttcggcaagttcctcgcg
atcgactgctcggggctgcacctgatcacgcacctgtcgcgcggcggctggttgcgctgg
ctcgacgaaccgtcgcagactcccccgaaactcggtcgcggtccgctcgccctccgcgtg
cacctgttcgcccccgacgcgacgacaccggccttcgatctcaccgaggccggcacgaag
aagcgcctcgcggtctggattgtcgacgatccgcagcaggtgcccggcatcgcccgcctc
ggccccgacgcgctcgccctcacccgcgacgagttcgccgagctcctgaccgacagcacc
tcgcgcctcaagacgttgctgatcgaccagaagattctcgcgggcatcggcaatgcctac
tccgacgagatcctgcacgtcgctcagcagtcgccgttcgcgaccgccggcaagctcacc
gacgacgcggcgaccgccctgtacggggcgatgcggtcggtgctgaccgatgccgtcacg
cgctcggtcgggcaggacgcggcgcgcctcaagggcgagaaaaggtcggggctgcgcgtg
cacggccgcaccggtgagccgtgcccggtgtgcggcgacaccgtccgcgaggtctcctac
accgaccgttcgttccagtactgcccgacctgccagaccggagggaaggtcctcgccgac
cggcggatgtcccgcctgctgaagtag
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integrated database retrieval system