KEGG   Rhodococcus sp. p52: IM25_10870
Entry
IM25_10870        CDS       T05434                                 
Name
(GenBank) DNA lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rhq  Rhodococcus sp. p52
Pathway
rhq03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rhq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    IM25_10870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhq03400]
    IM25_10870
Enzymes [BR:rhq01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     IM25_10870
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     IM25_10870
DNA repair and recombination proteins [BR:rhq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     IM25_10870
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zf-TFIIB NFACT_N OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: AOD22049
UniProt: A0A1B2UD24
LinkDB
Position
complement(2324547..2325413)
AA seq 288 aa
MPELPEVEALAVFLREHAVGSVIGRIDVAALNVLQTADPPITALQGRDITGAVRFGKFLA
IDCSGLHLITHLSRGGWLRWLDEPSQTPPKLGRGPLALRVHLFAPDATTPAFDLTEAGTK
KRLAVWIVDDPQQVPGIARLGPDALALTRDEFAELLTDSTSRLKTLLIDQKILAGIGNAY
SDEILHVAQQSPFATAGKLTDDAATALYGAMRSVLTDAVTRSVGQDAARLKGEKRSGLRV
HGRTGEPCPVCGDTVREVSYTDRSFQYCPTCQTGGKVLADRRMSRLLK
NT seq 867 nt   +upstreamnt  +downstreamnt
atgcccgagctccccgaggtggaagcacttgcggtgttcctgcgcgagcacgcggtcggc
agcgtcatcggacgcatcgacgtcgcggcgctgaacgtgctgcagacggccgacccgccg
atcacggcgctgcagggacgcgacatcaccggagcggtgcgcttcggcaagttcctcgcg
atcgactgctcggggctgcacctgatcacgcacctgtcgcgcggcggctggttgcgctgg
ctcgacgaaccgtcgcagactcccccgaaactcggtcgcggtccgctcgccctccgcgtg
cacctgttcgcccccgacgcgacgacaccggccttcgatctcaccgaggccggcacgaag
aagcgcctcgcggtctggattgtcgacgatccgcagcaggtgcccggcatcgcccgcctc
ggccccgacgcgctcgccctcacccgcgacgagttcgccgagctcctgaccgacagcacc
tcgcgcctcaagacgttgctgatcgaccagaagattctcgcgggcatcggcaatgcctac
tccgacgagatcctgcacgtcgctcagcagtcgccgttcgcgaccgccggcaagctcacc
gacgacgcggcgaccgccctgtacggggcgatgcggtcggtgctgaccgatgccgtcacg
cgctcggtcgggcaggacgcggcgcgcctcaagggcgagaaaaggtcggggctgcgcgtg
cacggccgcaccggtgagccgtgcccggtgtgcggcgacaccgtccgcgaggtctcctac
accgaccgttcgttccagtactgcccgacctgccagaccggagggaaggtcctcgccgac
cggcggatgtcccgcctgctgaagtag

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