Rhodococcus sp. p52: IM25_13850
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Entry
IM25_13850 CDS
T05434
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rhq
Rhodococcus sp. p52
Pathway
rhq00300
Lysine biosynthesis
rhq00470
D-Amino acid metabolism
rhq01100
Metabolic pathways
rhq01110
Biosynthesis of secondary metabolites
rhq01120
Microbial metabolism in diverse environments
rhq01230
Biosynthesis of amino acids
Module
rhq_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rhq00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
IM25_13850
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
IM25_13850
Enzymes [BR:
rhq01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
IM25_13850
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Gene cluster
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AOD22558
UniProt:
A0A1B2UEI0
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All DBs
Position
2998976..3000397
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AA seq
473 aa
AA seq
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MNAHPAGPRHAQIPHAPNLPERPADTAALNALAPHVWPRNAARGEDGVMRIAGIPVTELA
EKYGTPLFVVDEDDFRSRCREIAEAFGPSAKVHYASKAFLCSEIARWVHQEGLSLDVASG
GELAVALHAGFPAGKIAMHGNNKSVRELQAAVTAGVGHIVLDSLAEIDRLDAVAGEAGVV
QDVLIRVTVGVEAHTHEFISTAHEDQKFGLSLAGGNAMQAVRRVFAADNLRLVGLHSHIG
SQIFDVDGFELAAHRVIGLLRDIVAEFGVDKTSQMNIVDLGGGLGISYVPSDDPPPVADL
AAKLGDIVRTESALAGLPAPTLAVEPGRAIAGPGTVTLYEVGTLKDVEVGSGHVRRYISV
DGGMSDNIRTSLYQAEYESRLVSRVSDAEPVVSRVVGKHCESGDIVIRDAWMPADVAAGD
LLAVAATGAYCYSMSSRYNLLPRPAVVAVKDGVSRVLLRRETLEDLLNLEVSE
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcgcaccccgcgggaccgcgtcacgcccagatcccgcacgcccccaacctgccc
gagcgcccggccgacaccgcggcgctcaacgcgctggccccgcacgtgtggccccgcaat
gccgcgcgcggcgaggacggcgtcatgcgcatcgccggtatcccggtgaccgagctcgcc
gagaagtacggcaccccgctgttcgtcgtcgacgaagacgacttccgctcccgctgccgg
gagatcgccgaggccttcggcccgtcggcgaaggtgcactacgcgtcgaaggcgttcctg
tgcagcgagatcgcacggtgggttcatcaggaagggctctcgctcgacgtcgcgtccggc
ggtgagctcgccgtggccctgcacgccggattccccgccgggaagatcgcgatgcacggc
aacaacaagtccgtccgcgaactgcaggccgccgtgaccgccggggtcgggcacatcgtg
ctcgactcgctcgccgaaatcgaccggctcgacgcggtcgccggtgaggccggtgtcgtc
caggacgtgctcatccgcgtgaccgtgggcgtcgaggcccacacccacgagttcatctcc
accgcgcacgaggaccagaagttcgggctctcgctcgccggtggcaacgccatgcaggcc
gtgcgccgcgtcttcgcggccgacaatctccgcctcgtcggcctgcacagccacatcggc
tcgcagatcttcgatgtcgacggcttcgaactggccgcccaccgcgtcatcggcctgctg
cgcgacatcgtcgccgagttcggtgtcgacaagacctcgcagatgaacatcgtcgatctc
ggcggtggtctgggcatctcgtacgtgccgagcgacgacccgccgccggtcgccgacctc
gcggcgaagttgggcgacatcgtccgcaccgagtccgcgctcgccgggctgccggccccg
accctcgcggtcgaaccgggccgcgccatcgccggaccgggcacagtgacgctctacgag
gtgggaaccctcaaggacgtcgaggtcggttccgggcacgtccgccgctacatcagcgtc
gacggcggcatgagcgacaacatccgcacatcgctgtaccaggcggagtacgagtcgcgc
ctcgtctcccgcgtgagcgacgccgagccggtggtctcgcgcgtcgtcggcaagcactgc
gagagcggcgacatcgtcatccgcgacgcttggatgcccgcagacgtcgcagccggtgat
ttactggcggtcgcggcgacgggtgcatactgctactcgatgtcgagcaggtacaacctg
cttcctcgccccgccgtcgtggcggtcaaggacggcgtctcgcgcgttctgctgcgccgc
gagaccctcgaagatctgctcaacttggaggtttcggagtga
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