KEGG   Rhizobium sp. 11515TR: CKA34_26675
Entry
CKA34_26675       CDS       T06097                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhr  Rhizobium sp. 11515TR
Pathway
rhr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CKA34_26675 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhr03400]
    CKA34_26675 (ligD)
Enzymes [BR:rhr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CKA34_26675 (ligD)
DNA repair and recombination proteins [BR:rhr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CKA34_26675 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-ProteinID: ASW09499
UniProt: A0A248WDS3
LinkDB
Position
p11515TR-A:complement(1546822..1549419)
AA seq 865 aa
MALELYNRKRDFTRTSEPKGRASRNKAASAGNSFVIQKHDARRLHYDFRLELDGVLKSWA
VTRGPSLVAGEKRLAVQTEDHPLEYGGFEGTIPKGEYGGGTVIVWDKGSWTPLGDPHKGL
AKGHLEFELHGKKLGGRWHLIRMAGKPREKRENWLLIKGEDDAARPEGAPDILEERPESA
KTGRVIDEVAGEKPGWSSKTGKIDRRIARAKDESFNDKGRNKKKPSRVAPEREADAKPVE
PSALKGVRKAALPAFVEPALATLVSKPPTGKRWLHEIKFDGYRLEVRIEAGRVKLLTRSG
LDWTRKFGKEIVSAFKDLPVGTAIIDGELVVEPAAGASDFSALQADLSEGRSDRFVFYAF
DLIYLDGYDLTACPLVSRKDLLQKIISSETGILRFSSHFDENGDLLLNHACRLSLEGIVS
KIASDPYRSGRGKSWVKSKCSSRQEFVIGGWVPSTTSRNAIGSLVLGVYEHGKLQHVGRV
GTGYTHTVAEQLFKRLARLKAEESPFASRLTAEEHRGVRFIRPDLVAEVEFRAWTADGHL
RHASFRGLREDKNPLDIVRETPKSAAKTSTERPSRTRISLTHGDRLYWPDEGVTKAGLAD
YYTEVWRYMGPFVVGRPLALVRCPNGIGGQHFFQKHAWKGMNRNIALAKDPQGEEPYVSI
NDLNGLIGLVQAAVLEIHPWGSMVGNWEKPDMIIMDLDPGPNVAWTEVIAAAEETGERLK
RAGLVPFVKTSGGKGLHIVCPLVAKAEWPTVKSFTKDIADAMAADSPGRYVSTITKSKRR
GKILVDYLRNQRGSTAVAPYSTRARPGAAVSMPLSWEELSPAIGPDYFIVLNVPTRLAAL
RSDPWAEFRKAAEPLNPDAKRKRGS
NT seq 2598 nt   +upstreamnt  +downstreamnt
atggcgctggagctctataaccgcaaacgcgatttcaccagaacatcggaaccaaagggc
cgcgcgagcaggaacaaggccgcatcagccggcaacagcttcgtcatccagaagcacgac
gcgcgccggctccactatgattttcgcctcgaattggatggcgtgctgaagagctgggcg
gtgaccagggggccaagtctggtggccggcgagaagcggctggcggtacagaccgaagat
catcccttggaatatggcggcttcgaaggcacgatcccgaagggcgaatatggcggcggc
accgtcatcgtctgggacaagggttcgtggacgccgcttggcgacccccacaagggcttg
gcaaagggacatctcgaattcgagcttcacggaaaaaaactcggcggccggtggcacctc
atccgcatggccggaaagccgcgtgagaagcgggaaaactggttgttgatcaaaggagag
gacgatgcggcccgtccggagggtgcgcccgatatcctcgaggaacgaccggaatcggca
aagacgggacgggttatcgatgaggttgccggcgaaaagccgggctggtcgtcaaaaacc
ggcaagattgatcgcaggatagcccgagccaaggacgaaagcttcaacgacaagggcagg
aataaaaagaagccaagcagagttgcgcctgagcgggaagccgatgcgaagcccgttgag
ccatccgccttgaagggcgtcaggaaggctgctctgccggcatttgtcgaacccgcactg
gcgacgctggtatccaagccgcccacgggcaagcgctggcttcacgagatcaaattcgac
ggctatcggcttgaggtccgcatcgaggcaggccgcgtcaagctgctgacgcgcagcggc
ctcgactggacccggaaattcggcaaggagatcgtcagcgccttcaaggatctccccgtc
ggcacagccatcatcgatggcgaactggtcgtcgagccggccgccggcgcctcggatttt
tccgccctgcaggccgatctcagcgaggggcgcagcgaccgtttcgtcttctacgcattc
gatctcatctacctcgatggctatgatctaacggcctgccccctggtcagtcgcaaggac
ttgctgcagaagatcatttcgtccgaaaccgggatcctccgtttcagcagccattttgac
gaaaatggcgatctgctgttgaaccatgcctgccggttgagcctggaagggatcgtctcc
aagatcgccagcgatccctatcgctccggccgcggcaagagctgggtcaaatcgaaatgt
tcgtcacgacaggaattcgttatcggcggctgggtgccgtcgacgacatcgagaaacgcg
atcggctcgctggttctcggcgtctacgaacatggcaagctgcagcatgtcggccgcgtc
ggaaccgggtacacacacaccgtcgccgagcagctcttcaaaaggcttgcccgcctgaag
gcagaggaaagtcctttcgcatccaggctgacggcagaagaacatcgcggtgtccgcttc
atacggcccgacctggtcgcggaagtcgaattccgcgcttggacggccgacggccatctg
cgtcatgcttccttccgtggcttgagagaagacaagaacccactcgacatcgttcgcgag
acaccgaaatcggctgccaagacctcgactgaaaggccgtcgcggacccgtatctccctg
acccacggcgatcgtctttattggccggacgagggtgttacaaaagccggacttgcagat
tactacaccgaggtctggcgctacatggggccttttgtcgttggccggccgcttgcgctc
gtgcgctgcccgaacgggatcggcggccagcatttcttccagaagcacgcctggaagggc
atgaaccggaacatcgcattggcgaaggacccgcaaggcgaggagccctatgtgagcatc
aacgacctgaacggcctgatcggcctcgtacaggccgctgtcctcgagatccatccctgg
ggatcgatggtcggcaattgggaaaagcctgacatgatcatcatggatctcgatcctggt
ccgaatgtcgcatggacagaggtcatcgccgccgcggaagagaccggcgaacggctgaaa
cgagcgggtctcgttccctttgtcaagacatccggcggcaaagggctgcacatcgtctgc
ccgctggtcgccaaagccgaatggcctaccgtcaagtcctttaccaaggacatcgccgac
gcgatggccgctgacagccccggccgctatgtttcgaccatcaccaaatcgaaacgccgg
ggcaagatcctagtcgactatttgcggaaccaacgcggctcgactgcagttgcgccctat
tcgacccgcgctcgtccgggagccgccgtctccatgcccttgtcctgggaggaactgagc
cccgccatcggccccgactatttcatcgtgctcaacgtgccgacacggctcgccgcgctt
cggtcggatccctgggccgagttcaggaaagccgcagaaccgttgaaccccgacgcgaag
cgcaagcgcggctcatga

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