Rhizobium sp. 11515TR: CKA34_26675
Help
Entry
CKA34_26675 CDS
T06097
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CKA34_26675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_26675 (ligD)
Enzymes [BR:
rhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CKA34_26675 (ligD)
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CKA34_26675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASW09499
UniProt:
A0A248WDS3
LinkDB
All DBs
Position
p11515TR-A:complement(1546822..1549419)
Genome browser
AA seq
865 aa
AA seq
DB search
MALELYNRKRDFTRTSEPKGRASRNKAASAGNSFVIQKHDARRLHYDFRLELDGVLKSWA
VTRGPSLVAGEKRLAVQTEDHPLEYGGFEGTIPKGEYGGGTVIVWDKGSWTPLGDPHKGL
AKGHLEFELHGKKLGGRWHLIRMAGKPREKRENWLLIKGEDDAARPEGAPDILEERPESA
KTGRVIDEVAGEKPGWSSKTGKIDRRIARAKDESFNDKGRNKKKPSRVAPEREADAKPVE
PSALKGVRKAALPAFVEPALATLVSKPPTGKRWLHEIKFDGYRLEVRIEAGRVKLLTRSG
LDWTRKFGKEIVSAFKDLPVGTAIIDGELVVEPAAGASDFSALQADLSEGRSDRFVFYAF
DLIYLDGYDLTACPLVSRKDLLQKIISSETGILRFSSHFDENGDLLLNHACRLSLEGIVS
KIASDPYRSGRGKSWVKSKCSSRQEFVIGGWVPSTTSRNAIGSLVLGVYEHGKLQHVGRV
GTGYTHTVAEQLFKRLARLKAEESPFASRLTAEEHRGVRFIRPDLVAEVEFRAWTADGHL
RHASFRGLREDKNPLDIVRETPKSAAKTSTERPSRTRISLTHGDRLYWPDEGVTKAGLAD
YYTEVWRYMGPFVVGRPLALVRCPNGIGGQHFFQKHAWKGMNRNIALAKDPQGEEPYVSI
NDLNGLIGLVQAAVLEIHPWGSMVGNWEKPDMIIMDLDPGPNVAWTEVIAAAEETGERLK
RAGLVPFVKTSGGKGLHIVCPLVAKAEWPTVKSFTKDIADAMAADSPGRYVSTITKSKRR
GKILVDYLRNQRGSTAVAPYSTRARPGAAVSMPLSWEELSPAIGPDYFIVLNVPTRLAAL
RSDPWAEFRKAAEPLNPDAKRKRGS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggagctctataaccgcaaacgcgatttcaccagaacatcggaaccaaagggc
cgcgcgagcaggaacaaggccgcatcagccggcaacagcttcgtcatccagaagcacgac
gcgcgccggctccactatgattttcgcctcgaattggatggcgtgctgaagagctgggcg
gtgaccagggggccaagtctggtggccggcgagaagcggctggcggtacagaccgaagat
catcccttggaatatggcggcttcgaaggcacgatcccgaagggcgaatatggcggcggc
accgtcatcgtctgggacaagggttcgtggacgccgcttggcgacccccacaagggcttg
gcaaagggacatctcgaattcgagcttcacggaaaaaaactcggcggccggtggcacctc
atccgcatggccggaaagccgcgtgagaagcgggaaaactggttgttgatcaaaggagag
gacgatgcggcccgtccggagggtgcgcccgatatcctcgaggaacgaccggaatcggca
aagacgggacgggttatcgatgaggttgccggcgaaaagccgggctggtcgtcaaaaacc
ggcaagattgatcgcaggatagcccgagccaaggacgaaagcttcaacgacaagggcagg
aataaaaagaagccaagcagagttgcgcctgagcgggaagccgatgcgaagcccgttgag
ccatccgccttgaagggcgtcaggaaggctgctctgccggcatttgtcgaacccgcactg
gcgacgctggtatccaagccgcccacgggcaagcgctggcttcacgagatcaaattcgac
ggctatcggcttgaggtccgcatcgaggcaggccgcgtcaagctgctgacgcgcagcggc
ctcgactggacccggaaattcggcaaggagatcgtcagcgccttcaaggatctccccgtc
ggcacagccatcatcgatggcgaactggtcgtcgagccggccgccggcgcctcggatttt
tccgccctgcaggccgatctcagcgaggggcgcagcgaccgtttcgtcttctacgcattc
gatctcatctacctcgatggctatgatctaacggcctgccccctggtcagtcgcaaggac
ttgctgcagaagatcatttcgtccgaaaccgggatcctccgtttcagcagccattttgac
gaaaatggcgatctgctgttgaaccatgcctgccggttgagcctggaagggatcgtctcc
aagatcgccagcgatccctatcgctccggccgcggcaagagctgggtcaaatcgaaatgt
tcgtcacgacaggaattcgttatcggcggctgggtgccgtcgacgacatcgagaaacgcg
atcggctcgctggttctcggcgtctacgaacatggcaagctgcagcatgtcggccgcgtc
ggaaccgggtacacacacaccgtcgccgagcagctcttcaaaaggcttgcccgcctgaag
gcagaggaaagtcctttcgcatccaggctgacggcagaagaacatcgcggtgtccgcttc
atacggcccgacctggtcgcggaagtcgaattccgcgcttggacggccgacggccatctg
cgtcatgcttccttccgtggcttgagagaagacaagaacccactcgacatcgttcgcgag
acaccgaaatcggctgccaagacctcgactgaaaggccgtcgcggacccgtatctccctg
acccacggcgatcgtctttattggccggacgagggtgttacaaaagccggacttgcagat
tactacaccgaggtctggcgctacatggggccttttgtcgttggccggccgcttgcgctc
gtgcgctgcccgaacgggatcggcggccagcatttcttccagaagcacgcctggaagggc
atgaaccggaacatcgcattggcgaaggacccgcaaggcgaggagccctatgtgagcatc
aacgacctgaacggcctgatcggcctcgtacaggccgctgtcctcgagatccatccctgg
ggatcgatggtcggcaattgggaaaagcctgacatgatcatcatggatctcgatcctggt
ccgaatgtcgcatggacagaggtcatcgccgccgcggaagagaccggcgaacggctgaaa
cgagcgggtctcgttccctttgtcaagacatccggcggcaaagggctgcacatcgtctgc
ccgctggtcgccaaagccgaatggcctaccgtcaagtcctttaccaaggacatcgccgac
gcgatggccgctgacagccccggccgctatgtttcgaccatcaccaaatcgaaacgccgg
ggcaagatcctagtcgactatttgcggaaccaacgcggctcgactgcagttgcgccctat
tcgacccgcgctcgtccgggagccgccgtctccatgcccttgtcctgggaggaactgagc
cccgccatcggccccgactatttcatcgtgctcaacgtgccgacacggctcgccgcgctt
cggtcggatccctgggccgagttcaggaaagccgcagaaccgttgaaccccgacgcgaag
cgcaagcgcggctcatga
DBGET
integrated database retrieval system