Rhodococcus fascians PBTS 2: A3Q41_02846
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Entry
A3Q41_02846 CDS
T05030
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhs
Rhodococcus fascians PBTS 2
Pathway
rhs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3Q41_02846 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhs03400
]
A3Q41_02846 (mfd)
Enzymes [BR:
rhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3Q41_02846 (mfd)
DNA repair and recombination proteins [BR:
rhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3Q41_02846 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
IstB_IS21
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMY24138
UniProt:
A0A143QMV5
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All DBs
Position
2907865..2911554
Genome browser
AA seq
1229 aa
AA seq
DB search
MSSDSLPAMTTSGPAPIVPDAALHLSGLASVALTDASMVAVADAIGTAEHTLIGPHSVRP
FVAAAIAQHTQLLIVTATGREADDLTSELTQILGGGVAMFPSWETLPHERLSPSADTVGK
RLDVLRRLARPGDSDYGDPLRVIVTTVRSLVQPMAPGLGEIEPVTLKVGLDLDFDGLIHR
LVEFGYLRVDMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEITELRAFAVSDQRSLP
DHEVDLVIAPPCRELLLTQEVRDRAAVLAADNAGDTALVEMLDKLSAGVPVEGMEALLPL
LQPGELQLLADTLPAGTHVLLCDPERIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTS
TLDTSSLEGASLDLGASAYRSLRQVRESAQVHGRPWWTISPLASGNGEEVELAVDPVPEV
RGSEEALTALYATLRAHIATGGRAVISVAGAGTAKRIIERLAEAEVPAAHLDSGAVPVPD
VVNVLCGSLHDGLVFPDAKLVVVTESDLTGNRVAAAGEGRKLPAKRRNQVDPLALVAGDS
VVHDQHGIGRFVEMVERTIGGARREYLVVEYAPSKRGHPGDRLFVPMDSLDQLSRYVGGE
LPTLSKLGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGADTPWQREMEDAFG
FTETVDQMTAITEVKADMEKAVPMDRVILGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLAQQHLQTFTARMASFPVTVKGLSRFTHGADSKEVMAGLADGTVDIVVGTHRLLQTGV
AWKDLGLVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT
PPEERHPVLTYVGAYNDKQVAAAIRRELLRDGQVFFVHNRVSSIDKAAKKIRDLVPEARV
ATAHGQMNEETLERTVQGFWQRETDVLVCTTIIETGLDISNANTLIVERSDSLGLSQLHQ
LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV
LGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKPITTDEAPKEVRIDLPVDANIPPDY
VTSDRLRLEGYRKLAAAADSEGIDAVIDELVDRYGPLPEEVGRLVSIAKLRLIAKEYGLT
DVNVAGTQVKLAPMDLPDSKQIRLKRLYPSATYRATTGVVQLPLPRVEGGGVGAARVRDV
ELVQFIADLILSLDGKPSRSVLLEQTVGV
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccgattccctgcctgccatgaccacgtccgggccggccccgatcgttcccgac
gcggcgcttcacctttcggggctcgccagtgtcgcgttgacggatgcgtcgatggtcgcg
gtcgccgacgcgatcggaacggccgagcacacgttgatcgggccgcactcggtgcgcccg
ttcgtggccgccgcaatcgcgcagcacacccaacttctgatcgtcacggcgacgggacgc
gaagccgacgacctgacgagtgaactcacccagattctcggtggcggcgtcgccatgttc
ccgtcgtgggagacgctgccgcacgaacggctctccccgagcgccgataccgtgggcaag
cgtctcgatgtgctccgtcgtctcgcccgccccggcgacagcgactacggcgatccgctg
cgtgtcatcgtcaccaccgttcgctcgctggtgcagccgatggccccgggtctcggcgag
atcgaacccgtcacgctcaaagtcggtctcgatctggacttcgacgggctgatccatcgc
ctcgtcgaattcggctacctgcgcgtcgacatggtgggcaagcgcggcgaattcgccgtc
cgcggcggcattctcgacctgttctcgccgacggccgatcatccggtccgcgtcgaattc
tggggcgacgagatcaccgagctccgcgcattcgccgtctccgatcagcgatcgctcccc
gatcacgaggtcgatctcgtcatcgcgccgccgtgtcgagaattgcttctcacgcaggag
gttcgcgatcgcgcggccgtgctcgccgccgacaatgccggtgacaccgcgttggtcgag
atgctggacaagctgtcggccggagtcccggtggagggcatggaggcgctgctgccgctg
ttgcaacccggcgagttgcaactgctcgccgacacattgcccgccgggacccacgtcctg
ctctgcgatcccgagcgaatccgaactcgcgcaaccgatttggtccgcacaggacaggaa
ttcctcgaagcgtcctggactgcggcatccatcggtggagccgcgccgctggatacgtcc
accctcgatacgtccagcctcgagggggcctcgctcgatctcggtgcctccgcgtaccgc
tcgctgcggcaggtacgcgaatcggcccaggtgcacggccggccgtggtggaccatcagc
cccttggcgtcgggcaacggcgaagaagtggagctcgccgtcgatcccgtgcccgaggtg
cgaggttccgaggaagcgttgacggcgctgtacgccaccctgcgagcccacatcgccacc
ggtggacgggccgtcatctccgtggccggagccggtaccgccaagcgcatcatcgaacgc
ctcgccgaggccgaagttcctgccgcacatctcgattccggtgccgtcccggttccggac
gtcgtcaacgtcctgtgcgggtctttgcacgacggtctggtgtttcccgacgcaaagctc
gtggtcgtcaccgagagcgatctcaccggtaaccgtgtcgcggcggcgggggaggggcgc
aagctaccggccaagcgtcgcaatcaggtcgatccgctggctctcgtcgccggcgacagc
gtcgtgcacgaccagcacggcatcggccggttcgtcgagatggtcgagcgcaccataggc
ggcgccaggcgcgaatacctcgtcgtcgaatacgcgccgagcaagcgcggtcatcccggc
gaccgactgttcgtgccgatggattcactcgatcaactctcgcgctacgtcggcggcgaa
ctgccgacactgagcaagctcggcgggtccgactgggcgaacaccaaacgcaaggcgcgc
aaggcggttcgcgagatcgccggcgaactcgtgcagctgtatgccgctcgtcaggcggct
ccgggacacgccttcggggccgacactccgtggcagcgcgagatggaagatgcgttcggg
ttcaccgagacggtcgatcagatgactgccatcaccgaggtcaaggccgacatggagaag
gccgtcccgatggaccgcgtcatcctcggcgatgtgggttacggcaagaccgagatcgcc
gtgcgtgccgcgttcaaggcagttcaggacggcaagcaggtggccgtcctggttccgacg
actcttcttgcgcagcaacatctgcagacgttcaccgcgcggatggcgtcgttcccggtg
acggtcaaaggactctcgcgcttcacccacggtgccgactccaaggaagtgatggccggt
ttggccgacgggaccgtcgacatcgtcgtcggcacgcacaggttgctgcagaccggtgtc
gcctggaaggacctcggcttggtcatcgtcgacgaggagcagcgtttcggcgtcgagcac
aaggagcacatcaagtcgctccgtactcacgtcgacgtcctgacgatgtcggccaccccg
attccgcgaacgctggagatgagcctggcgggcattcgcgagatgtcgaccatcctcacc
ccgcccgaggagcgacatccggtgctgacctacgtcggtgcctacaacgacaagcaggtt
gccgccgccattcggcgcgaattgctgcgcgacggccaggtgttcttcgtgcacaaccga
gtgagctcgatcgacaaggccgccaagaagattcgggatctcgtccccgaggcgcgagtg
gcgaccgcacacggtcagatgaacgaggaaacgctcgaacgcaccgtgcagggtttctgg
caacgcgagaccgacgtgctggtgtgcaccaccatcatcgagaccggtctcgatatctcc
aacgccaacacgctgatcgtcgaacgctccgattcgctcggcctgtcccagctgcatcag
ctgcgcggtcgagtgggtcgtagccgcgaacgcgggtacgcgtacttcctgtacccgccg
gagaagccgctcaccgaaaccgcctacgaccgtttggcgaccatctcgcagaactccgac
ctcggagccggtatggccgtggcgatgaaggacctcgaaattcgtggtgccggaaatgtt
ctgggagccgagcagtccggccacgtcgccggcgtcggattcgatctgtacgtgcggctg
gtcggtgaagcggtcgaggcctaccgcgctgccgccgacggtaagccgatcacgacggac
gaggcacccaaggaagtgcgtatcgaccttcccgtcgacgcgaacatcccaccggattac
gtcaccagcgaccggcttcggctcgagggctaccggaaactcgccgccgcggccgactcg
gaaggcatcgacgccgtcatcgacgaactcgtcgatcgctacggcccgctacccgaggag
gtcggacgcctggtctccatcgccaagctgcgcctgatcgccaaggaatacggcctgacc
gacgtcaatgtggccgggacacaggtgaaattggctccgatggacctgcccgattccaaa
cagatcaggctcaagcgcctctacccgagcgcgacgtatcgtgcgaccaccggagtggtg
cagctgccgttgccccgcgtcgaaggcggcggtgtcggagcggcgcgcgtccgcgatgtc
gaattggtgcagttcatcgccgatctcatcctatccttggacgggaagccatctcggtcc
gtcctgttggagcaaactgtgggggtgtag
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integrated database retrieval system
