Pseudorhizobium banfieldiae: NT26_2902
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Entry
NT26_2902 CDS
T04765
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rht
Pseudorhizobium banfieldiae
Pathway
rht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NT26_2902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rht03400
]
NT26_2902
Enzymes [BR:
rht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NT26_2902
DNA repair and recombination proteins [BR:
rht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NT26_2902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCF20626
UniProt:
L0NII4
LinkDB
All DBs
Position
2817399..2819939
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AA seq
846 aa
AA seq
DB search
MALEAYNEKRDFKASPEPKGRKVKSGGNSFVIQKHAARRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGDFEGTIPQGNYGAGSVLLWDRGTWHPIGDQKRGYSKGH
MEFELKGEKLEGRWHLVRMANRRGEKRENWLLIKGEDEFARAEGDADILEELPKSVKTGR
LLEELQGGTKAKAKRKTPPKTSDPSPSDEALNGPVKNNSLPKLKGAKKAELPDFVTPQLA
TLVKSAPSGKRWIHEIKLDGYRVQARIDGGDVKLLTRTGLDWTHKFGDAIVDALKRLPVQ
QAVLDGEVVVNGGSGASEFSLLQQDLSEGRTDRLVFFAFDLLHLDGFDLTPSKLVDRKQT
LEGILSGSSDIVRYSEHFDDEGGLVLKHACRLSLEGIISKIGDAPYRGGRGKDWVKSKCS
ARQEFVVAGYVPSSVSSSAIGSLVMGYYQDGKLMHAGRVGTGYSNKVAQTLFRQMQELKV
TKSPFEEKLTAVERKDVVFLRPELVAEVEFRGWTADAHIRHASFRGMREDKQARDVVQEA
GPAMASSDDQKELGSRTVTLTHPDRIYWPDAGVTKAGLADYYVEVWRHMAPFVVNRPLAL
VRGPDGIGKPLFFQKHAWKGMNKHIGTAKDPADPSEEDIIIRDLDGLLGLVQGGTLEIHP
WGSTIDQWEKPDMVNIDLDPGDGTTWEDVIAAAYEVRERFEAMGLSGFVKTSGGKGLHVV
APVKPKAEWPDVKAAMKALADSMAGDSPDRYVSTITKSKRKGKILIDYLRNGRGATAVAP
YSTRARPGAPVSMPIAWEELEQAIGPAYFTVNNATSRHEQLDRDPWSDFREAEAEIKTSR
TKRQKR
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgaggcctataacgagaaacgcgatttcaaggcgtcgcccgagccgaagggg
agaaaagtcaagtccgggggaaacagcttcgtcatccagaagcatgcagcgcgccggctt
cactacgacttccggctggaaatggatggcgtgctgaagagctgggcggtcacgcgtggc
cccagccttgtgccaggtgagaagaggctcgccgtccatgtcgaagatcacccgctcgac
tacggcgatttcgaaggaacgatcccgcaaggaaactacggagcaggctcggtcctcctc
tgggatcgcggcacctggcatccgatcggagatcagaaacgcggctacagcaagggacac
atggagttcgagctcaagggggagaagctcgagggccgatggcatctcgtgcgcatggcc
aaccgccgtggtgaaaagcgggagaactggctcctcatcaagggggaagatgaattcgcg
cgggccgaaggcgatgccgacatcctggaggagcttcccaagtccgtgaagaccggacgg
cttctcgaggaactgcaaggcggcacgaaggcgaaggccaagcgaaaaacgccgccgaag
acatccgacccttctccttcggacgaggcgctgaatggacccgtcaagaataacagctta
ccgaagctgaagggagcgaagaaggcagagctgcctgacttcgtgacacctcagcttgcg
acgctcgtgaagagtgcgccttccgggaagcgatggatccacgaaatcaagctggatgga
taccgtgtccaggcacgtatcgacggcggcgacgtcaagctcctgacccggaccggcctc
gactggacccacaaattcggcgatgcgatcgtggatgcactcaagcgcctgccggtgcag
caggccgtgctggacggcgaagtggtggtcaacggcggatcgggcgcaagcgaattctcg
cttctccagcaggatctgagcgaggggcgaacggatcggctggtcttcttcgccttcgat
ctcctccatctcgatgggttcgatctgactccctccaagcttgtggatcgcaagcagacg
ctggaaggcatcctgtccggcagcagcgacatcgttcgttacagcgagcatttcgatgac
gaaggagggcttgtgctgaagcacgcctgccgcctcagcctcgaggggatcatctccaag
atcggagatgccccctaccgcggcgggcggggaaaagactgggtgaagtcgaaatgctcg
gcgcggcaggagttcgttgtcgccggctatgtcccctcctccgtctccagcagcgccatt
ggctcgctggtgatgggctattaccaggacggcaagctgatgcatgctggccgggtgggc
accggttacagcaacaaggtcgcccagacgctcttccgccagatgcaggagctgaaggtc
acgaagagcccgttcgaggagaaactgacggcggtcgagcggaaggatgtcgtcttcctc
agacccgaactggtggcggaagtcgagttccgtggctggactgctgatgctcacatcaga
cacgcctcctttcgtggtatgagggaggacaagcaggcaagggatgtggtgcaagaggcc
ggtccagccatggcaagcagcgatgaccaaaaggaactggggagccggacggtaacgctc
acccacccggaccgcatctactggccggatgccggcgtgaccaaggctggccttgccgat
tactacgtcgaggtttggcggcacatggctccgtttgtggtcaaccgcccccttgcattg
gtgcgaggtcccgatggcatcggcaaacctcttttcttccagaagcatgcctggaagggc
atgaacaagcatatcggcacggcgaaggatcccgccgatccttccgaagaggatatcatc
atccgggacctcgacggcttgctcggtctcgttcagggcgggacgctcgaaatccatccc
tggggctcgaccatcgaccagtgggaaaagccggacatggtcaatatcgacctcgacccc
ggcgacggaacgacctgggaggacgtcatcgcagccgcctatgaggttcgcgaacgcttc
gaggcgatggggctttccggattcgtcaagacgtccggtggcaaggggctgcacgtcgtc
gcaccggtgaaacccaaggcggagtggccggacgtcaaggcggcgatgaaggcgctcgcc
gacagcatggccggcgatagccccgaccgctatgtctccaccatcaccaagtcaaagcgg
aagggaaagatcctgatcgactacctgcgcaatgggcgaggcgccacggctgtggccccc
tattcgacgcgggctcgccctggagccccggtatccatgcccatcgcctgggaggagctg
gagcaggcaatcgggccggcgtacttcacggtgaacaacgcaacgagccgccacgagcag
ttggacagggatccgtggtcggatttcagggaagcagaggcggagatcaagacgtctcgg
acaaagcgccagaagcgctag
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