Rhizobium sp. S41: BA939_19610
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Entry
BA939_19610 CDS
T05451
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhv
Rhizobium sp. S41
Pathway
rhv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BA939_19610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhv03400
]
BA939_19610
Enzymes [BR:
rhv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BA939_19610
DNA repair and recombination proteins [BR:
rhv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BA939_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ANV26166
LinkDB
All DBs
Position
2:complement(1070376..1071407)
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AA seq
343 aa
AA seq
DB search
MKRPAKPLLQNDSLTAKSQPRRRRDPAQPNLPFDPMPDRVEPCLALLKTAPPSGPEWVYE
MKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPAIAAAARDLGVATAILDGEAVVLNGEGR
SDFGALQRSLGGRGGKRSSTEAVLFAFDLMYFDGHDLTRTELSVRRHLLGDLLEDATGAI
QLSEEIEADGAELLASACSLGMEGIIAKHRDSNYRSGRTGDWLKIKCVQSESFMIVGYEQ
SAVARGGIGSLLLAARRGHDWVYVGAVGTGFKEKDAAYLKQTLDRLKTKTPVVPLKGRNY
VFAQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVHELD
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgccccgccaagccgcttctgcagaatgacagcctgacggcaaaatcgcagccg
cgccgcaggcgcgatccggctcagcccaatctgcccttcgacccgatgccagatcgcgtc
gagccgtgtctggcgctcctgaagacggccccgccgtccggccccgagtgggtctatgaa
atgaagtgggacggctatcggctcgcggtccatatcgagccgaagggtgtgcgtatcatt
acccggggcggccacgactggacgcaccggtttcccgctatcgccgcagcggccagggac
cttggagttgcaacagccatccttgatggcgaagcggtggtgctgaacggcgaaggccgc
tccgattttggcgctctgcaacgctcgctcggtgggcgaggcggcaaacggtcgtcgaca
gaagccgtactcttcgccttcgatcttatgtatttcgatggtcacgatctcactcgtacc
gagctgtcggtccgccggcacttgctgggggacctgctggaagacgcgaccggcgcaatc
cagctgtccgaagaaatagaagcggacggcgctgaattattggcgagcgcgtgttccctc
ggcatggaaggcatcatcgcaaaacatcgtgacagcaattatcgctcgggccggaccgga
gactggctgaagatcaagtgtgttcaaagcgagagcttcatgattgtcggctacgagcag
tcggcggtggcgcgcggcgggattggcagtttgctgctggcggcgagacgtggccatgac
tgggtctatgttggcgccgttggaaccgggttcaaggagaaagatgcggcgtatctgaag
cagaccctggataggctgaagacgaagacaccggtcgttccgctcaagggcaggaattac
gtcttcgcgcagccgacgctcatcgccgaaatcgagttccgtggctggaccgacgatggc
aacctgcgtcatgcgtcctataaaggactgcgcgaggtacaggacaatgccgcggtccat
gaactcgactga
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