KEGG   PATHWAY: rhw00020
Entry
rhw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus sp. WMMA185
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhw00020  Citrate cycle (TCA cycle)
rhw00020

Module
rhw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhw00020]
rhw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhw00020]
rhw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhw00020]
rhw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhw00020]
rhw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhw00020]
Other DBs
GO: 0006099
Organism
Rhodococcus sp. WMMA185 [GN:rhw]
Gene
BFN03_13805  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BFN03_13825  citrate synthase [KO:K01647] [EC:2.3.3.1]
BFN03_00145  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BFN03_03995  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BFN03_02900  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
BFN03_13025  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFN03_19060  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFN03_00175  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BFN03_00180  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BFN03_01490  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BFN03_01485  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BFN03_04100  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFN03_09320  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFN03_04095  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BFN03_09315  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BFN03_04110  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BFN03_04105  succinate dehydrogenase [KO:K00242]
BFN03_02420  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BFN03_02235  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BFN03_19425  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
BFN03_05895  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BFN03_05495  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BFN03_00730  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BFN03_10175  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BFN03_15760  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BFN03_15755  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BFN03_15750  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BFN03_09950  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhw00010  Glycolysis / Gluconeogenesis
rhw00061  Fatty acid biosynthesis
rhw00071  Fatty acid degradation
rhw00190  Oxidative phosphorylation
rhw00220  Arginine biosynthesis
rhw00250  Alanine, aspartate and glutamate metabolism
rhw00280  Valine, leucine and isoleucine degradation
rhw00350  Tyrosine metabolism
rhw00470  D-Amino acid metabolism
rhw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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