Rhodococcus sp. WMMA185: BFN03_01930
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Entry
BFN03_01930 CDS
T04814
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhw
Rhodococcus sp. WMMA185
Pathway
rhw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFN03_01930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhw03400
]
BFN03_01930
Enzymes [BR:
rhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFN03_01930
DNA repair and recombination proteins [BR:
rhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFN03_01930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
AAA_30
DUF3638
IstB_IS21
UB2H
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
AOW94282
UniProt:
A0A1D8T9F8
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All DBs
Position
459001..462648
Genome browser
AA seq
1215 aa
AA seq
DB search
MSSPLIATEPSADTPLAGLAKIALGDGVITQVVEALGRDHLDVVAPPSARPFVAAALAER
THLLMVTATGREADDLTAELQEMIGDGVAQFPSWETLPHERLSPSADTVGRRMEVLRRLA
RPDDPAYGAPLRVIVTTVRSLVQPMAPGLGEIEPITLREGTEHDFDGLIQRLVDMAYTRV
DMVGKRGEFAVRGGILDFFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELEIGSVVA
PPCRELLLTEDVRARAAQLAVDNQADAALVEMLDKVSGGIPVEGMEALLPVLRPGQLQLL
TDVLPDGAHILLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLAGGGIDL
GASAYRSLRQVRESAEAAGLAWWNLSPLASGSGEELELAVTPAPQVRGSDDLLAELFVNL
RAHVTTGGRAVVVVAGSGTAHRVLERLHEAEVPATELAPGSEPVRGQVGVLRGSLHDGLV
LPGDDATPGLVIVTETDLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPITVRGLSRFTHTAEAKEIIDGMADGEVDVVIGTHRLLQTAVRWKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRDLVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIVETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEIPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDLYVRLVGEAVEAFRAAADGKPIDATETPREVRIDLPVDAHIPPNYVTSDRLRLEG
YRKLAAAGVLDEIAAVVEELVDRYGPLPEELRRLVSIAKLRLLCREYGIEEVAVVGTQLK
ISPMALPDSKQLRLKRIYPSARYRATTGMVQLPLPRAGSGGVGADRVRDLELVQYIADLL
LALDGKAAGSVVMEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctaccgagccctccgccgacacgccgctagcaggtttggcg
aagattgcgctgggcgacggtgtcatcacgcaggttgtcgaggcgctcgggcgagatcac
ctcgatgtcgtcgcgcccccgtccgcccgcccgttcgtggctgcagcactcgccgagcgc
acacatctgctgatggtcaccgcgaccggccgagaggccgacgacctcaccgccgagctg
caggaaatgatcggtgacggcgtggcgcagttcccctcctgggagacgctcccgcacgag
cggttgtccccgagtgccgacacggtcggccgtcgtatggaggtactccgcaggctcgcg
cggcccgacgacccggcctacggggcgccgctgcgtgtcatcgtcaccacggtccggtcg
ctcgtgcagcccatggcgcctggcctcggtgagatcgaacccatcaccctgcgcgaaggt
actgaacacgacttcgacgggttgatccagcggctcgtcgacatggcgtacacccgcgtc
gacatggtgggcaagcgcggcgagttcgcggtccgcggaggcattctggacttcttctca
cccaccgccgaccacccggtccgcgtcgaattctggggcgacgaagtcaccgaactacgc
gctttctcggtggccgaccagcgatcgctgcccgaactcgaaatcgggtccgtagtcgcg
ccgccttgccgcgaactcctcctcaccgaggacgtccgggcccgcgctgctcaactcgcc
gttgacaaccaggctgacgccgcgctcgtcgagatgctcgacaaggtgtcaggcggcatc
ccggtagaggggatggaggcgttgctaccggtgctgcggcccggccaactgcaactgctc
accgatgtgctgcccgatggcgcacacatcctcctgtgcgatccggagaagatccggact
cgggccaccgacctcgtccgaacgggccaagaattcctcgaagcgtcatggacggcggcc
tcgatcggtggtgccgccccgctcgacacctcggtactggcgggaggcggtatcgatctc
ggcgcctccgcttaccgctcgcttcgccaggtccgagaatctgcggaggccgccggactt
gcatggtggaatctcagtccgctcgcctcgggcagcggcgaggaactggagctggcggtc
accccggcgccgcaggtgcgaggctccgatgaccttctggcggaactattcgtgaacttg
cgggcccatgtgaccaccggcgggcgtgccgtcgtcgtggtcgcaggttccggcaccgcg
catcgcgtgctcgagcggcttcacgaggcggaagtgcctgcgacggaactcgcacccggg
tcggaacctgtgcgcggccaggtcggcgtgttgaggggttcgcttcacgacggactcgtg
ttgcccggcgatgacgcgaccccgggtctggtcatcgtcacggagacggatctcaccggc
aatcgggtggccgcggtcggcgacggcaagaggctgccggcgaagcgccgcaaccaggtg
gacccccttgcgctgacggctggcgacatggtggtgcacgaccagcacggaatcggacga
ttcgtcgaaatggtcgagcggaccatcggtggcgcgcgccgcgaatatctcgtgatcgag
tatgccgccagcaagcggggacatccgggtgaccgcctgtttgttccgatggagtctctc
gatcaactctcgcggtatgtcggcggcgaacttcccgccctcagcaagctcggtgggtct
gactgggcgaataccaaacgcaaggcgcgcaaggcggttcgcgagatcgccggtgaactc
gtgcagttgtacgcggcgcggcaggcggcacccggtcacgccttcggccccgacacgcca
tggcagaaggagatggaggatgccttcgcgttcacggagacacacgatcagctgaccgtg
atcagtgaggtcaaggctgacatggagaaggctgtgccgatggaccgcgtcgtcatcggc
gacgtcggctacggcaagaccgagatcgcggtgcgggcagcgttcaaggctgtgcaggac
ggcaagcaggtggcggttctggtaccgacaacgctcctcgcgcaacagcacctgcaaacg
ttcaccgaacgcatggcagcgttcccgatcacggttcgcgggctgtcccgtttcacgcat
acggccgaggccaaggagataatcgacgggatggccgacggcgaagtcgacgtggtgatc
ggcacgcaccgcctactgcagaccgcggttcgctggaaagatctcggactcgtgatcgtc
gacgaagagcagcgcttcggcgtcgagcacaaggagcacatcaaggcgctccgcacccat
gtggacgttctgaccatgtcagcaactccgattccgcgaaccctcgagatgagcatggcg
ggaatccgagaaatgtcgacgattctgacgccgccggaggagcggcacccgatcctcacc
tacgtcggtgcgtacgccgacaagcaggtggccgcggccattcggcgcgagctgctgcgt
gacgggcaggtcttctacgtccacaaccgagtcagctcgatcgacaaggcggcccaacgc
attcgtgatctcgtacccgaagcgcgggtggtggtggcgcacggccagatgaacgaggac
accctcgagcggaccgtgcagggattctgggaacgcgactacgacgtgctggtgtgtacc
accatcgtcgaaacgggtctggacatctcgaacgccaacaccctcatcgttgagcgtgcg
gactctcttgggctctcgcagttgcaccagctgcgtggtcgagtcgggcgtagccgcgag
cgcgggtacgcgtacttcctctacccgccggagattccgctcaccgaaactgcctacgat
cgcctcgcaaccatctcgcagaactccgacctcggtgctggtatggccgtcgcgatgaag
gatctcgagatccgtggagccggaaacgtattaggggccgagcagtccggccacgtggcc
ggtgtcgggttcgacctgtacgtcaggttggtcggggaggcagtcgaggcgtttcgtgcg
gcagcagacggcaaacctatcgatgccaccgagactcctcgggaagtccgcatcgacttg
cccgtcgatgcgcacattcctcccaactacgtcaccagcgaccgattgagactcgaaggc
taccgcaagctcgcggcggcaggggtgctcgacgaaatcgctgcggtggtagaggaactg
gtcgatcggtacggcccgctgcccgaagagttgcgacgactggtgtccatagcgaagctg
aggctgctgtgtcgcgagtacggcatcgaggaagtcgcggtcgtgggcacacagttgaag
atctccccgatggcgttgccggattcgaagcagttgcgtctcaagcggatctatccgagc
gcccggtaccgtgccaccacaggcatggtgcagttgccgctgcccagggcaggttcgggc
ggagtgggtgcagatcgggtgcgcgatctggaattggtgcagtacatcgcggacctcttg
cttgcactggacggcaaagccgctggttccgtggtgatggaggcctga
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