Roseovarius indicus: RIdsm_01880
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Entry
RIdsm_01880 CDS
T06222
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RIdsm_01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_01880
Enzymes [BR:
rid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RIdsm_01880
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RIdsm_01880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEW26086
UniProt:
A0A0T5PCY3
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All DBs
Position
2021320..2023746
Genome browser
AA seq
808 aa
AA seq
DB search
MNKLDRYNDKRDFDTTPEPRGEAALAGGSQASFVVQKHDASSLHFDFRLEWDGVLLSWAV
TKGPSDDPSEKRLAVRTEDHPVAYGSFEGTIPEDEYGGGTVMLWDSGAWEPLHDVAKGLK
EGKLHFRLHGARMEGGWVLVKMGGGKGDRDNWLLIKERDDFAGRSADALVNKYKRSVTTG
RTMREIAADTPAFEAVTHKKALPRFRKVELATLKDEPPEGEGWQHEVKFDGYRCLMAVGK
GGVRLYTRNGKDWSDRFGALCGPADALPCDAALIDGEVVAERGGFSELQAALKAGDPLVL
HAFDCLHLDGDDLTGKHLSERREALEGLFGDLPPRGPLRLSPVLEGDGAEALAAMCKAGG
EGIVSKKIDAPYSGKRSKAWIKAKCIQEAEFVVGGWSPSDKKGRAFSSLLLGSYEDEGFV
YRGRVGTGFDDEDFEALAKELKRLGRKTAPFEGDLPSETKGSQWVTPELVAQVEYTEFTS
EGRIRHGAYKGLREDKEAENVSAKAEAETDSGDEEIGGVRVSSTGRVMFPDAGLTKGDVA
RHYARVAERMLEHVEDRPLSLLRCPDGIEEECFFQKHAGKGFPEDIRTVPIKEKDGDTAD
YMYVTTPAGLIGAAQMGAVEYHVWGARRDKLERPDRMVFDLDPDEGLGFDAVKRAAVEVR
EGLEACGLQSVPMVTGGKGVHVIVPLRRIAEWDRVKDFAKGFAQALAEKEPKRYTATMSK
EKRKGKLFIDWLRNERGATAIAPYSLRARPGAAVAVPVSWDELEELDRPDGFHMGDMEDR
LSRTCPLGEVDAQGLGKGAMEALEDWAG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagctcgaccgctataacgacaaacgtgatttcgacaccaccccggagccgcgg
ggcgaggcggccctggccggcggatcgcaggcgtcgttcgtcgtgcagaagcatgatgcg
agcagcttgcatttcgatttccggctggaatgggacggggtccttttgtcgtgggccgtg
acaaaggggccgtcggatgacccgtcggaaaagcggctggcggtcaggacggaggatcat
cctgtcgcctatggcagcttcgaagggacgattccggaagacgagtatggcggcggcacc
gtgatgctgtgggacagcggagcgtgggagccgctgcatgatgtggcgaagggcctgaag
gaagggaagctgcatttccggctgcatggtgcgcggatggaaggcggctgggtgctggtg
aagatgggcggcggcaagggggatcgcgacaactggctgctgatcaaggagcgggacgat
ttcgccgggcggagtgccgatgcgctggtcaacaagtataagcgaagcgtgacgaccggc
cggacgatgcgggagattgcggccgacacgccggctttcgaggcggtgacgcacaagaag
gcgctgccgcggttccggaaagtggagctggcgacgctgaaggatgaaccgcccgagggc
gaggggtggcagcacgaggtgaagttcgacgggtatcgctgcctgatggccgtgggcaag
ggcggcgtgcggctttacacgcgcaacggcaaggactggtccgaccggttcggggcgctg
tgcgggccggcggatgcgctgccatgtgatgccgcgctgatcgatggcgaggtggtggcc
gagcggggcgggttttcggagttgcaggcggctttgaaggcgggtgatccgctggtgtta
cacgcgttcgattgcctgcacctggatggagacgacctgaccggaaagcatttgtcggag
cggcgtgaagcgttggagggcctgttcggggatctgccgccgcgcgggccgcttcggctg
agcccggtgctggagggcgacggcgccgaggcgctggcggcgatgtgcaaagccggcggc
gaggggatcgtgtcgaagaagatcgacgcgccctacagcggcaagcgcagcaaggcctgg
atcaaggcgaaatgcattcaggaggcggagttcgtggtgggcggctggtcgccctcggac
aagaaggggcgggcgttttcctcgctcttgctggggagctacgaggacgaggggttcgtc
tatcgtggccgcgtcggcaccggcttcgatgacgaggatttcgaggccctggcgaaggag
ctgaagcggctgggccggaagacggcgccgttcgagggcgatttgccgtcggagacgaag
ggttcccagtgggtgacgcccgagcttgtggcgcaggtggagtataccgagttcaccagc
gaaggacggatcaggcatggcgcctacaaggggctgcgcgaggacaaggaggcggagaac
gtgagtgcgaaggcggaagcggaaaccgacagtggcgacgaggagatcggcggtgtgcgg
gtgtcgagcacggggcgcgtcatgttccccgatgcggggctgaccaagggcgacgtggcg
cggcattatgcgcgggtggccgagcggatgctcgaacatgtcgaggacaggccgctgtcg
ctgttgcgctgtccggacgggatcgaggaagagtgctttttccagaaacatgcggggaaa
ggctttcctgaggacatcaggaccgtgccgatcaaggagaaggacggggacacggcagat
tacatgtatgtcaccacgcccgccggcctgatcggggcggcgcagatgggggcggtagag
tatcatgtctggggggcgcggcgggacaagctggaacggcccgaccggatggtgttcgac
ctcgaccccgacgagggtttgggctttgacgcggtgaaacgggcggctgtcgaggtgcgc
gaggggctggaggcctgcggacttcagtcggtgccgatggtgaccggtggcaagggtgtg
catgtgatcgtgccgctgaggcggatcgccgagtgggatcgggtgaaggacttcgccaag
gggttcgcgcaggccttggccgagaaagagcccaagcgctacaccgcgacgatgtcgaag
gagaagcgcaagggcaagctgttcatcgactggctccgcaacgagcggggggcgacggcg
attgcgccctattcgctgcgggcgcggcccggggcggcggtggctgtgccggtgagctgg
gatgagttggaggagctggaccgacccgacgggtttcatatgggtgacatggaggaccgc
ttgtcgcggacgtgcccgctgggcgaggtcgatgcgcaggggcttggcaagggcgcgatg
gaggcgcttgaggactgggccggatag
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