Rhizobium indicum: FFM53_019055
Help
Entry
FFM53_019055 CDS
T07009
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rii
Rhizobium indicum
Pathway
rii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFM53_019055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rii03019
]
FFM53_019055
Enzymes [BR:
rii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFM53_019055
Messenger RNA biogenesis [BR:
rii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFM53_019055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
AAA_22
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QKK19565
LinkDB
All DBs
Position
complement(3941563..3943296)
Genome browser
AA seq
577 aa
AA seq
DB search
MVRSGDSHCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDITVASGEAPANIGGGPRRANGNGNNRNRNGGQGREG
QGRGEGRGDQNRSEHRGSRQERRPRREGEGSEVRAGGEERRPRPERPTSRNEDFRGQRRG
EATPDLGPDNDLASTSDFRASAKPQRPAHHGAHANGEPSGHHRGNSRHAHGRPARKHGED
RGPQQAQAGEPRRDGNGGNRRGGSGSRNGGGQRRERA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcattgtggcgccccgaaaggttataccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgctactttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacatgccattcctctcctcctcgaaggccgcgacctgatcggc
cttgcccagaccggcaccggcaagaccgctgctttcggactgccgcttatcgaaaagctg
ctcgccgatgaacggcgccccgacaaccgcacgacgcgcacgctgatccttgcgccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaaattcatccgcaagtcgtcgctg
cgcatcaatgtcgtcgtcggcggcgtctcgatcaacaagcagcagcttcagcttgaaaag
ggcacagatattctcgtcgccacgcccggccggctgctcgacctcatcaatcgccgcgcg
atcacgctgactgccgttcgctatctcgtgctcgacgaagccgaccagatgctcgacctc
ggcttcgtccacgatctgcgcaagatcgccaagatggtgccgaaaaagcgtcagaccatg
ctgttctcggcgaccatgccgaaggcgatcgccgatcttgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcctccaggtaaggctgccgacaaggtcgagcagtacgtt
catttcgtcgccggcaagaacgacaagacggagctgctccgcaagtcgctgaccgaaaac
cccgatggccgcgccatggtcttcctgcgcaccaagcacggtgccgagaagctgatgaag
catctcgaaaacatcggctattccgtcgcctcgatccacggcaacaagagccagggtcag
cgcgagcgggcgctgaaggccttccgcgacggcagcatcaagacgctgatcgccaccgac
gtcgccgcccgcggcatcgacattccggccgtcagccacgtctacaactacgacctgcct
gaagtgcccgacgcctatgtgcatcgcatcggccgcacggcgcgtgccggccgcgacggc
atcgccatcgctttctgcgctcccgacgaagccaagctgctgcgtgatatcgagcgcctg
atgggcatcgacatcactgtcgccagcggcgaagcgccggcaaacatcggcggcggcccc
cgtcgcgccaacggcaacggcaacaaccgcaatcgcaatggcggccagggtcgcgaaggt
cagggtcgtggcgaaggccgtggcgaccagaatcgctccgagcatcgcggcagccgtcag
gaacgccgcccgcgccgcgaaggtgaaggcagcgaagtccgcgccggcggcgaggagcgt
cgtccgcgtccggagcgcccgaccagccgcaacgaggacttccgcggtcagcgccgcggt
gaagcgaccccggatctcggccccgacaacgatctggcctcgacctccgatttccgcgcc
tctgcaaagccgcagcgtccggcccatcacggcgcccatgccaatggtgagccgagcggt
catcaccgcggcaacagccgccatgcccacggccgcccggcccgcaagcatggcgaggac
cgcggcccgcagcaggcccaggccggcgaaccgcgccgcgacggcaacggcggcaatcgt
cgcggtggctccggctcccgcaacggtggcggccagcgccgcgaacgcgcctga
DBGET
integrated database retrieval system
