Rhizobium indicum: FFM53_025585
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Entry
FFM53_025585 CDS
T07009
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rii
Rhizobium indicum
Pathway
rii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FFM53_025585 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_025585 (ligD)
Enzymes [BR:
rii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FFM53_025585 (ligD)
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FFM53_025585 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
QKK19822
LinkDB
All DBs
Position
pPR12A201:250827..253472
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AA seq
881 aa
AA seq
DB search
MASDKLSTYRSKRDFKKTDEPSGEKRLARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSHDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENNGEAILEEN
NTSVASGRTMEMIAAGKGRKPKPFMIEDGDVQADAVWDSNHGLAAEERKENVGGGRKSKP
VTKVDLPDFIAPQLCRTLERPPAGTGWLHEIKFDGYRIQMRVLDSEATLKTRKGLDWTAK
YPEIAEAASTLPDAIIDGEICALDDNGVPDFAALQAALSEGKTGELVYFAFDLLYEGGED
LRSLPLIERKTRLQSLLSDAGNDPRIRFVEHFDTGGDAVLRSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRSDHFVYVGRVGTGYGAKTVE
TLLPKLKALETAKSPFTGIGAPKKEAEVTWLKPKLVAEIEFAGWTADGIVRQAAFKGLRE
DKPAKEVKAERPAKPAQTDVPQPAVEAKARPTRKKGAKAEVMGVLISNPDKPLWPDANDG
KPVTKEELARYYEAVGSWLIEHIKGRPCSIIRAPDGIGGEEFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGLISFCKTTGGKGLHVVTPLAVNKRKPLSWAEAKGFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARSGATVSMPLSWTQVKSDLDPK
RFTIRTVPALLAKSSAWEDYCDGQRPLEQAIKRLAKARVTA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaaactatcgacctatcggtcgaagcgcgactttaaaaaaacggatgag
ccaagcggcgaaaaacgcctcgcgcgcagcaatcgccgtcgcttcgtgatccagaaacat
gatgccacccggctgcactacgatctgcggctcgagttggatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctcacgacccgcacgacaagcggctggcagttgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcactattccgaaaggtcagtatggcggc
gggacggtcatgctctgggatcggggctattgggaaccggaaggaaataagagccccgag
caggcactcgccaagggtgacttcaagttcaccttggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacggcggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctccgtcgaaaacaatggcgaagcgatcctcgaggagaac
aacacctctgtcgcctccggccgaaccatggagatgattgccgccggcaagggacgaaag
cccaagcctttcatgatcgaggatggcgacgttcaggctgatgccgtctgggacagcaac
cacggactggctgccgaagagcgaaaagagaacgtcggaggcggtcggaaatcgaaaccg
gtcacaaaggtcgatctgccggatttcattgcgccgcagctctgccggacactggaacgc
cctccggccggcaccggctggcttcacgagatcaagttcgacggttaccggatccagatg
cgagtgctggatagcgaggcgacgctgaagaccaggaaagggctcgactggacggcaaaa
tatcccgagatcgccgaggcggcatcgacgctgcccgatgcgatcatcgacggcgagatc
tgcgccctggacgataatggcgttcctgatttcgctgccctgcaggcggccctttcggaa
ggcaagaccggcgagctcgtctatttcgccttcgatcttctctatgagggtggcgaggac
ttgcgatctctgccgctcatcgagcgcaagacgcggcttcaaagccttctctccgacgcc
ggcaatgatccgcgcatccgcttcgtcgagcatttcgacaccggcggtgatgcagttctc
cggtctgcctgcaaactctcactggaaggcatcgtctcgaaagaggcggatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcgaaatgccgcgccggccacgaggtggtg
atcggcgcctatgccaagaccaatgggaaatttcgatccctgctggtcggcgtctaccgc
agcgaccacttcgtctatgtcggccgcgtcggcacaggatatggcgcgaagacggttgaa
acgctgcttccgaagttgaaagcgctcgaaacggcgaaatcgcctttcaccggcatcggc
gcgccgaagaaggaggccgaggtcacctggctgaagcccaagctcgtggcggaaatcgaa
ttcgctggctggaccgccgacggcattgtccggcaggcggccttcaagggactgcgggaa
gacaagccggccaaagaggtcaaggcggaacggccggcaaaacccgcgcaaactgacgtg
ccgcaaccggccgtggaggcgaaggccagacctacccgcaaaaaaggcgccaaggcggag
gtcatgggggtgctgatctccaacccggacaagccgctgtggccggatgccaatgacggc
aaacccgtcaccaaggaagagctggcccgttactacgaagccgtcggctcctggctgata
gagcacatcaagggtcggccatgttccatcatccgcgcgccagacgggatcggcggcgag
gagtttttccaacgccatgcgatgcccggcacctcgaaccttctcgaactggtcaaggtc
ttcggcgataaaaagccctatctgcaaatcgaccgggtcgaaggcttggctgccgtcgcg
cagatcggcgccgtcgagctgcacccctggaattgcgaaccgcatcagcctgaggtgccc
ggccggctcgtcttcgaccttgatccaggtccggacgtgccattctccgcggtcgtttcg
gcagcccgcgaaatgcgggaccgtctcgacgcgctgggtctgatcagcttttgcaagacg
accggcggcaagggtctgcacgtcgtcactccgcttgcggtcaacaagcgcaagccgctt
tcgtgggctgaagcgaagggttttgcgcacgatgtctgccagcagatggcgcgcgacaat
cccgatctctatctcatcaagatgacgaagagcctgcggaacggccggatcttcctcgac
tatctgcgcaatgaccgcatggcaacggcggttgcacctttgtcgccgcgcgcccgatcg
ggagccaccgtctcaatgccgctcagctggacgcaggtcaaatcagatctggaccccaag
cgcttcaccatccgcaccgttcctgcgcttctggcgaaatcgtcggcctgggaagactat
tgcgacggccaacggccactggaacaggcgatcaagcgccttgccaaggctcgggtcacg
gcttga
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