Rhizobium indicum: FFM53_032015
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Entry
FFM53_032015 CDS
T07009
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rii
Rhizobium indicum
Pathway
rii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FFM53_032015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rii03400
]
FFM53_032015
Enzymes [BR:
rii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FFM53_032015
DNA repair and recombination proteins [BR:
rii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FFM53_032015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKK21057
LinkDB
All DBs
Position
pPR12A203:complement(41963..43027)
Genome browser
AA seq
354 aa
AA seq
DB search
MPKPPRSKPLLRDTEAPIRSRPRGKRNPAQPQLPFDPMPERVEPALAQLKSRPPKGSEWS
WELKWDGYRLAVHIEPQGIRILTRGGHDWTHRFPAIEQAARALGPATMIIDGEAVVLDDE
GRPDFGLLQQSLGASGKQAGNRASDAVLYAFDLIYLDGHDLRGVEYRSRRHLLEDTLNGP
TNDQVGAIRLSETLDGEPAVLLEHVCRLGLEGIVGKHLDRPYRSGRTGDWVKVKCIQSEA
FFIVGYERSAASTAGFGSLVLAAYRGDELIHVGSVGTGFRQAEIIRLRKMLDTLRWKRKQ
PPLPYSGSADIVWVEPTLIAEIEFRAWSTDGKLRHPSYKGLRERQDNADVFRLD
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcctccgagatcaaaacccctccttcgtgacaccgaggccccgatccgttcc
cggccgcgaggcaagcgaaatccagcccagccacagctccctttcgatcccatgcccgag
cgcgtcgagcctgcgctggcgcaattgaagtcccgtcccccaaagggaagcgagtggagc
tgggagctgaaatgggatggctatcgccttgccgttcatatcgagccccaaggcatccgg
atcctcacccgcggcggccatgactggacgcaccggtttccagcgatagagcaggccgcc
cgagcgctcgggccggcgacgatgatcatcgacggcgaagccgtcgtgctcgacgacgag
ggccggccggatttcgggctgctgcagcaatcgctgggcgcatccggcaaacaagctggc
aaccgcgcctccgacgccgtcctttacgctttcgatcttatctaccttgatggccacgat
ctgcgcggtgtcgaataccggtcccgccgacaccttctcgaggacacgttgaacggccca
acgaatgaccaggtcggcgccatcagactatcggaaacactcgatggcgaaccagctgtc
ctgcttgagcatgtctgccgcctcggcctggagggcatcgtcggcaagcacctcgatcgg
ccctatcgttccggccggaccggggactgggtgaaagtcaaatgcatccagagcgaggcc
ttcttcatcgtcggttatgagaggtcggcagcgtccacggccggcttcggctctttggtg
ctcgctgcgtatcgtggtgatgagctcatccacgtcggaagcgtcggcacgggattcagg
caagccgagatcatcagattgcggaagatgctggacacgctgcgatggaagcgaaagcaa
ccgcccctgccctattccggaagcgccgatattgtctgggtcgaaccgacactgatcgcc
gagatcgagtttcgcgcctggtcgactgacgggaaactccgtcatccgtcctacaagggc
ctgcgagaacgccaggacaatgccgacgtcttccggctcgactag
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