Agrobacterium pusense IRBG74: BN877_I0055
Help
Entry
BN877_I0055 CDS
T02867
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rir
Agrobacterium pusense IRBG74
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rir03019
]
BN877_I0055 (hrpB)
Enzymes [BR:
rir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BN877_I0055 (hrpB)
Messenger RNA biogenesis [BR:
rir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BN877_I0055 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_19
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CDI06977
UniProt:
U4PP80
LinkDB
All DBs
Position
complement(53971..56457)
Genome browser
AA seq
828 aa
AA seq
DB search
MTRTPAPIKTDLPELPVSAVLAEIAGALSGARRAVLSAPPGAGKTTLVPIYLLQQRWRGD
GKIILLEPRRLAARAAAGRMVDLLHEDVGDTVGYRMRLDNRISSKTRIEVVTEGVFARMV
LDDPELSDVSTVIFDEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERISALM
GGAPVIQSLGRTFPIDIRYEERWQGMPVDEKVARAIREAHASETGSILAFLPGQSEITRT
AARLEGHFPDDTDIIPLYGNLSQKEQDAAIRPAASGRRKIVLATSIAETSITIDGVRVVV
DSGLQRLPVFEPATGITRLETVRASRASADQRAGRAGRTEPGVAIRLWHQGQTAALSAFT
PPQILASDLAGLALDLAHWGVHDPSSLAFLDAPPEAALKESVALLKNLGALDESGALTPQ
GRLMRGLSLPPRLAAMVIAAAGEGSGKKAAMLAVMLTEQGLGGNDIDLDDRLRRFLADRG
ERAQAARKLAFRLLDTVGDMPAANDLPSEAGPLLLHAYPDRIALQRGARGRYVMANGRGA
ELAETERLAASRMLVVADITGRAAQPRILAAAGIDRADIEERMPHLIVQQDQLLFDKASG
QARARRVVRLGAIILDETPLPRPDGEQAAQALANGVRDFGIGILPFSKETAQLRDRIGFL
NASIGEPWPDVRDEALLSRLDEWFIPFQHGVRSLQDIRPGSLSEGILSLVPHEVARDLGR
LAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPI
QTTRDLPGFWAGSWKDVRADMRGRYPRHPWPEDPADALPTSRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaacaccagcgccaataaagaccgacttacctgaacttcccgtcagcgctgtt
ctcgcggaaatcgcaggtgccttgtcgggggcgagacgtgcggttctctcggcccctccc
ggggcgggcaaaacgacgctggtgccgatttatctcctacagcagaggtggcggggcgac
ggaaagatcattcttctcgagccacgccggcttgcagcccgcgcagcggctggacgcatg
gtcgatctcctgcatgaagatgtcggtgacaccgtcggctaccgcatgcggctcgacaat
cgtatttcatcaaaaacccggatcgaggtggtaacggaaggcgtatttgcccggatggtt
ctggatgatcccgagctttccgatgtctcgacggtgatattcgacgaatttcatgagcgc
tcgcttgacggagatttcgggctggcgctggccctcgatgtccaggccggtttgcgtgag
gacttgcggatcctcgtcatgtccgcaactctcgacgttgaacgcatcagtgcgcttatg
ggtggcgctccggtcattcaaagtcttggaaggacctttccgatcgacattcgttacgag
gaacgctggcagggcatgccggtcgatgaaaaggtggcaagggcgattagggaagcccat
gcatcggaaacagggtccattctggccttcctgcccggacagtcggaaattacccggacg
gctgcaaggctggaaggacatttccccgacgatacggatatcatcccgctttacggcaat
ctttctcagaaggagcaggacgccgcgatcaggccggcagcctccgggcgacggaagatt
gtccttgcaacatcgatagcggagacctcgataaccatcgatggtgtgagggtcgtggtc
gacagcggtctgcagcggttgccggttttcgaaccggcgaccggcatcaccaggcttgag
accgtgcgggcatcacgcgcctcggccgatcagcgcgccggtcgcgccggccgaaccgag
cccggtgttgccattcgcctctggcatcaggggcagacggcagcactcagtgcatttacg
ccgccgcaaattttggcgagcgatcttgccggccttgcgctcgatcttgcccattggggt
gttcatgacccctcgtctctcgcctttctggacgcgccacctgaggctgccctcaaagag
tcggtcgcactcctgaaaaatcttggcgcccttgatgaaagcggcgcactgacgccgcag
ggccgcctgatgcgaggcctctccctgccgccgaggctcgcagcgatggtgattgcagcc
gcaggcgaaggctcgggaaaaaaggcggcgatgcttgcggtcatgctgacggaacagggc
ctgggcggaaatgatatcgatctcgatgacagactgcggcgctttcttgccgatagaggt
gaaagggcgcaggcggcgcgcaagctggctttccgccttctcgacacagtcggtgatatg
ccggcggcaaacgacctgccgagcgaggcaggaccgcttctgctgcacgcatatccggac
aggatcgcgcttcagcgcggcgcgcgcggccggtatgtcatggcgaatggccgcggggct
gaactggctgaaacggagcggctggcggcgagccgaatgcttgttgtcgctgacattacg
ggacgggccgcgcagccgcgcatccttgcggcggccggcatcgacagggctgatatagaa
gagcgtatgccacatcttatcgttcagcaggatcagctgctgttcgacaaggcgagcgga
caggcgcgggcgcgccgggtagtgcgtctgggcgccatcattctggacgaaacgcccctg
ccccgtcccgacggtgagcaggcagcgcaagcgctcgccaacggcgttcgggatttcggc
atcggcatacttcctttttcgaaagagaccgcgcaattgcgcgatcggatcggatttctg
aatgccagcatcggagagccctggccggatgtccgcgacgaggcgttgctttcgcggctg
gacgaatggttcatcccttttcagcatggcgtccggagccttcaggacatccggcccggc
agtctttccgaagggattctgtccctggtgccacatgaggtcgcccgagatctcggcagg
ctggcgccgacccatttcgaagcgccgacgggccagcggcatcccatccgctatgacgca
agcgagccgacgctttccattcgcgtgcaggagcttttcgggctgaaggcgcacccggcc
attgcgcaggggcggttgccgctgctcctggaattgacgtcgccggcgcacaggccgata
cagacgacgcgtgaccttcccggcttctgggcgggatcgtggaaggacgttcgggcagat
atgcgtggtcgctatccgcgtcatccgtggccggaggatcccgccgatgccctgccgacc
agccgtgcgaaaccgcgcggaacgtga
DBGET
integrated database retrieval system
