Agrobacterium pusense IRBG74: BN877_I2420
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Entry
BN877_I2420 CDS
T02867
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN877_I2420 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rir03019
]
BN877_I2420 (rhlE)
Enzymes [BR:
rir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN877_I2420 (rhlE)
Messenger RNA biogenesis [BR:
rir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN877_I2420 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_19
CMS1
Flavi_DEAD
AAA_22
UTP25
Snf7
Motif
Other DBs
NCBI-ProteinID:
CDI09309
UniProt:
U4PW22
LinkDB
All DBs
Position
2308709..2310181
Genome browser
AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRAFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKQAAGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGHRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagattgttgccagcgttacccagctt
ggctacacaaccccgacccccattcaggcaaaagccattccgctgctgctcgaaggccgc
gacctgatcggcctcgcacagaccggaaccggcaagaccgccgctttcggcctgccgatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcacgctcatc
cttgccccgacccgcgagctggtgaaccagatcggcgaaaacctgcgcgctttcgtgaag
aagacgccgctgcgcatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggacattctggtggcaacccccggccgcctgcttgacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgctggacgaagcggaccag
atgctcgacctcggcttcatccacgatctgcgcaagatctcgaagatggtgccggccaag
cgccagacgctgctcttctccgccaccatgccgaaggcgatcgccgatcttgcccacagc
tacctgaccgatccgctgaaggtcgaagtgaccccgcccggcaaggcagccgacaaggtg
gagcaatatgtccacttcgtcgccggcaagaacgacaagaccgagcttctgaagaagtcg
ctcaacgagaacccggatggccgcgccatcgtgttcctgcgcacaaagcacggtgcggag
aagctctacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgcgccctgaagggcttcaaggacggcgagatcaaggttctg
gtcgcaaccgacgtcgcggcccgcggcatcgatatcccggccgtgacgcacgtcttcaac
tacgacctgccggaagtaccggacgcttatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgatggcatcgccattgctttctgcgcaccggacgagacccgcctgttgcatgac
atcgaaaagctgatgaagatcgatattccggttgcttctggtgaacgcccggccggtctt
gccagcccgacgcgccccaacaacaaccgcggcggacgcaataacaatggcggccaacag
cgcggcccgcgcgaaggcggacgccacaacggcgaatcccgcccgtctcgccaccacgcg
ccgcgcgatgcggacaatgatcttgaagtcacgtccgacttcaagcgcgtgaagcaggcc
gcaggcgacgcaggccgcccggctggcccgcgcaagcatcgtcgtccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaaacgcgct
tccggtaacggccatcgcggccgcaaccgttaa
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