Agrobacterium pusense IRBG74: BN877_p0681
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Entry
BN877_p0681 CDS
T02867
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rir
Agrobacterium pusense IRBG74
Pathway
rir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN877_p0681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rir03400
]
BN877_p0681
Enzymes [BR:
rir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN877_p0681
DNA repair and recombination proteins [BR:
rir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN877_p0681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CDI12395
UniProt:
U4QFY4
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All DBs
Position
IRBL74_p:complement(573111..574142)
Genome browser
AA seq
343 aa
AA seq
DB search
MKRPAKPLLQNDSLTAKSQPRRRRDPAQPNLPFDPMPDRVEPCLALLKTAPPSGPEWVYE
MKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPAIAAAARDLGVATAILDGEAVVLNGEGR
SDFGALQRSLGGRGGKRASTEAVLFAFDLMYFDGHDLTRTELSVRRHLLGDLLEDATGAI
QLSEEIEADGAELLASACSLGMEGIIAKHRDSPYRSGRTGDWLKIKCVQSESFMIVGYEH
SAVARGGIGSLLLAARRGHDWVYVGAVGTGFKEKDAAYLKKTLDRLKTKTPVVPLKGRNY
VFAQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVHELK
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcccgccaagccgctcctgcagaatgacagcctgacggcaaaatcgcagccg
cgccgcaggcgcgatccggctcagcccaatctgccgttcgacccgatgccagatcgcgtc
gagccatgtctggcgctcctgaagacggccccgccgtccggccccgagtgggtctatgaa
atgaagtgggacggctatcggctcgcggtccatatcgagccgaagggtgtgcggatcatt
acccggggcggccacgactggacgcaccggtttcccgctatcgccgcagcggccagggac
cttggagttgcaacagccatccttgacggcgaagcggtggtgctgaacggcgagggccgc
tccgattttggcgctctgcaacgctcgctcggtgggcgaggcggcaaacgggcgtcgaca
gaagccgtactcttcgccttcgatcttatgtatttcgatggtcacgatctcactcgtacc
gagctgtcggtccgccggcacttgctgggggacctgctggaagacgcgaccggcgcaatc
cagctgtccgaagaaatagaagcggacggcgctgaattattggcgagcgcgtgctccctc
ggcatggaaggcatcatcgcaaaacatcgtgacagcccttatcgctcgggccggaccgga
gactggctgaagatcaagtgtgttcaaagcgagagcttcatgattgtcggctacgagcac
tcggcggtggcgcgcggcgggattggcagtttgctgctggcggcgagacgtggccatgac
tgggtctatgttggcgccgttggaaccgggttcaaggagaaagatgcggcgtatttgaag
aagaccctggataggctgaagacgaagacaccggtcgttccgctcaagggcaggaattac
gtcttcgcgcagccgacgctcatcgccgaaatcgagttccgtggctggaccgacgatggc
aacctgcgtcatgcgtcctataaaggcctgcgcgaggtacaggacaatgccgcggtccat
gaactcaaatga
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