Rhizobium jaguaris: CCGE525_28380
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Entry
CCGE525_28380 CDS
T05891
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rjg
Rhizobium jaguaris
Pathway
rjg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CCGE525_28380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rjg03400
]
CCGE525_28380 (ligD)
Enzymes [BR:
rjg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CCGE525_28380 (ligD)
DNA repair and recombination proteins [BR:
rjg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CCGE525_28380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AYG62665
UniProt:
A0A387FZM8
LinkDB
All DBs
Position
pRCCGE525c:1311011..1313530
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AA seq
839 aa
AA seq
DB search
MVLETYREKRDFSKTSEPRGRKRKTAAHNSFVIQKHAARRLHYDFRLELDGVLKSWAVAR
GPSLVPGDKRLAVQVEDHPLAYGDFEGTIPKGEYGGGSVIIWDRGTWEPDGDPHKGLEKG
HIELELHGEKLHGRWHLVRMARRARETKDNWLLIKVDDEAARPEGADDILEERPESVKTG
RLIEELEGEEPGWSSKTGRIKKPQRSATKIVVDPSSVMKARKSALPDFVEPTLAMLTNKP
PSGKQWLHEIKFDGYRLQARIEDGRVRLLTRTGLDWSDKFGKELLTEFAALPLKTALVDG
ELVVETASGAPDFAALQADLRDGRSDRFVFYAFDLLYLDGYDLRAAPLIERKKMLEKIIP
SGTGKIRFSIDFDVDGDLLLEHARRLGLEGIVSKQADEPYRSGRGRGWLKSKGSFRQEFV
IAGYVPSSTARKAIGSLVLGIFDKGRLQYVGRVGTGFTNKVAEDLYSRLEAMRVDKNPLD
QRLSADEARGVRFVRPELVAEIEFRTWTGDNLLRHAAFRGLREDKSANEVVRETSIDARA
EPELPKRTVILTHADRIYWPDEGVTKEGLADYYTDVWTYMAPFVVQRPLALLRCPDGISG
QHFFQKHAWKGLNESIVLIHDPKDEDDTPLISIDDLDGLLGLVQAGSLELHPWGVTVADW
EHPETIIMDLDPGPNVPWERVIEAAEETRDRMRSAGLEAFVKTSGGKGLHVVSPLKPTAE
WPAVKAFTKSIADQMAADSPERYVSTITKSKRQGKILIDYLRNQRGSTAVAPYSTRARPG
AAVSMPLTWDELSPAIGPAYFTVNNTPTRLAALRSDPWEDFRAAAAPLEKAKSKKSGVR
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcgagacctatcgcgaaaagcgggatttttccaagacatccgaacccaggggg
cgcaaacgcaagacggcggcgcacaacagtttcgtcatccagaaacacgcggcccgccgt
ctgcactatgattttcgcctggagcttgacggcgtcttgaagagctgggcggttgcaagg
gggccgagcctggttccgggggacaagcgcctggcagtccaggtcgaggatcacccgctc
gcctacggcgatttcgaaggcactattccgaaaggcgaatatggcggcggctcggtgatc
atctgggatcgcggcacctgggagccggatggcgatccgcacaaaggcttagaaaagggc
cacatcgagctcgaactgcacggggagaagctccacggccgctggcatttggttcgcatg
gccagacgcgctcgggaaacgaaagataattggctgctcatcaaagtcgacgacgaggcg
gcccggcccgagggtgcggatgacattctcgaggagcggccggaatcggtgaagaccggc
cggctgatcgaggagctcgagggagaagagcccggttggtcttcgaagacgggcaggatc
aagaaaccccagcggtccgcaacgaaaattgtggtcgatccctcgtccgtgatgaaggcc
aggaagtcggccttgcccgatttcgtcgagccgacattggcgatgctgacgaacaagccg
ccgagtggcaagcaatggcttcatgaaatcaagttcgacggctatcgcctgcaggcccgc
atcgaggacggccgcgtcagattgctgacacgcaccggtctcgactggtcagacaagttc
gggaaagaacttcttactgaattcgccgctcttccgctcaagacggcgcttgtggatggc
gaactggtggtcgagaccgcgtccggcgcgccggatttcgcagcccttcaggccgatctt
cgcgacggcaggagcgatcgtttcgtgttctacgccttcgatctcctctatctcgacgga
tatgatctgcgcgcagcccctctgatcgagagaaaaaagatgctggagaaaatcatacct
tcggggaccggcaagatccgcttcagcattgatttcgatgtcgatggcgatctgctgctg
gagcatgcccgccgtctgggtctggaaggcatcgtttcgaagcaagccgatgagccttat
cgctccggccgcggcagaggctggctgaaatcgaagggttccttccggcaggaattcgtg
atcgcgggttatgtgccgtcgtcgacggcgcgcaaggcgatcggttctctcgtgctcggc
attttcgacaagggcaggctgcaatatgtcggccgcgtcggcacgggatttaccaacaag
gttgcggaggatctttattcacgacttgaagccatgcgggtcgataaaaacccgctcgat
caacgtctcagcgcggatgaagcacgtggcgtccgttttgtgcgtccggaactggttgcg
gaaatcgagttccgcacatggacaggggataacctgctgcggcacgccgcatttcgcggt
ctgcgcgaggacaagtcggcgaacgaggttgttcgagagacctccatcgacgcgcgtgcg
gaacccgaactgccaaagcggaccgtcattctcacgcatgctgaccgtatctactggcca
gacgaaggcgttaccaaggaaggtctcgccgattactacaccgatgtctggacatatatg
gcgcccttcgtcgtccagcggccattggcactgctgcgttgccccgatggcatcagcggc
cagcacttcttccaaaagcatgcgtggaaaggcctgaacgagagcattgtcctcatccat
gatcccaaggacgaggacgacactccgctgatcagcatcgacgatctcgatggcttgctc
ggtctcgtgcaggcaggatcgctggagcttcacccctggggcgtcacggtcgccgattgg
gagcatcccgagaccatcatcatggatcttgaccccggacccaacgtaccttgggagcga
gtgatcgaagcggcggaggaaacgcgagatcgcatgaggtcggccggcctcgaagccttc
gtcaagacatcaggcggcaagggcctgcatgtcgtatcgccattgaagccaacagccgaa
tggcccgccgtcaaagctttcacgaaatccattgccgaccagatggccgcggacagcccc
gagcgctatgtttccaccatcaccaagtcgaagcggcaaggcaaaatcctgatcgactac
ctgcgcaatcagcgcggctcaacggctgtcgcgccctattcgacgcgagcgcgtccgggg
gctgcggtctcgatgccgctgacctgggacgaacttagtccggcgatcgggccagcctat
ttcacggtcaataatacgcccacccggctcgcggcacttcggtcagacccctgggaggat
tttcgagcggcggccgctcctttggagaaagcaaaatccaaaaagagcggagtgcgctag
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