Rhinichthys klamathensis goyatoka (western speckled dace): 130071388
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Entry
130071388 CDS
T09701
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130071388 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130071388 (fip1l1b)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130071388 (fip1l1b)
BRITE hierarchy
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
130071388
NCBI-ProteinID:
XP_056092149
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISVTSAPPDTEEVTET
TETTTTTTTTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAY
GGTPVNLNIKSAGSRAYGGSKVKGVDLEAPGSINGVPVLEVDVESFEEKPWRKPGADLSD
YFNYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITIPTHASKA
DFSTPSNLYKTGINPARISPPHWAGPPTQEMPYYTKTPGTIDVIGGGTATISRVEGRRRH
NLEGNNIQVISEHSTSDTEPPAVAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPP
RMPITVPPPNFPPPTGGPPPSLIPTMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVSP
WPGLMDNPKQWDYYPRRDKEREKERERDRQRERGHERDHSPTPVAYNSDEERYRSYREYG
ERGYERHRERASREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSK
RSKEGKEPSEEHSVDQENQEAME
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgccagtgcaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaggaagaagaggccaaa
ctgacagcagccatcagtgtgacctctgctcctcctgataccgaggaggtcaccgagacc
accgagaccaccaccaccaccaccactaccaccaccaccaccactggaaatggtgtggcc
agtcaggaggaagcacctggagaagatgaagacagtgagagcgatagcgatgatgacgat
gatgatgtccgtgtcaccattggagatatcaaaacaggggcgccacagtacacggcatat
gggggaactccagtgaacctgaacataaaatcagctggcagcagagcgtatggaggttct
aaagtgaagggcgtagacctcgaagctccaggcagcatcaatggagttccagtcctggaa
gtggatgtggagtcctttgaggagaaaccatggaggaagccaggtgcggacttgtctgac
tattttaactatggttttaatgaggacacgtggaaagcgtactgtgaaaagcagaagagg
ttacgcatgggcctcgacattctcaacattggatccaccactagcaagatctcagttcag
cagggtcgtacaggtaacagtgagaaggagatcacaatacctactcatgcatctaaagca
gacttttccactccatccaacctgtataaaacaggaatcaacccagcgaggatatcccct
ccgcactgggcaggacctcccactcaagaaatgccatattatacgaagacgcccgggacc
atagatgtgattggaggagggactgccaccattagcagagtggaaggacgacgtcgccac
aatctggaggggaataacatccaggtgatctcggaacattccacctctgacactgaaccg
cccgccgtggctaagatgccgccacctttctttcctccggggccactgcctccaaacatc
ccccctcctccattcctccctcctcctgtcagtcaggctccacctctaatcccgcctcca
cggatgccaatcactgttccacctcccaatttccctcctcccacaggaggacctcctcct
tcactgatccctactatggacaacagtgggcacccaggaggatatgatggacgtcctgtt
gctccatacccttttcctacaggtgggtttcctccacccatgcaaggagctgttagcccc
tggcccggtttgatggacaacccaaagcagtgggactactaccctcggcgagacaaagag
agggaaaaagagcgagaaagggacaggcagagggaacggggccacgagagagaccacagt
cccacccctgtggcttataacagtgatgaggaaaggtatcgttcttaccgtgagtatgga
gaaagagggtacgagaggcatcgggagcgagcgagccgcgaaaaggaggagcgtcacaga
gagaggagacacagagagaaagaggaggggaggcacaagtcatcacggagtagtagcaga
cgaagacatgacagcgaggagggggacagtcaccggcgccacaagcacaagaagtccaag
aggagcaaagagggcaaggagcccagcgaggagcattctgttgaccaggagaaccaggag
gccatggagtaa
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