Rhinichthys klamathensis goyatoka (western speckled dace): 130072987
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Entry
130072987 CDS
T09701
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130072987 (upf3b)
03015 mRNA surveillance pathway
130072987 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130072987 (upf3b)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130072987 (upf3b)
mRNA cycle factors
P-body specific factors
130072987 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
130072987
NCBI-ProteinID:
XP_056094317
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MKEDKENTRPRERKVEIKCDENDKPEKPNKEKKEAMTKIVIRRLPPSLTKEDLEEQLQPL
PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDVLLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIEDDADYKKFLEFYNGDEEKFPSNPETLLEEIEARTKELSA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKFKKGE
KASDKDKDQPKDEQPKIKLLRKPEKADNGDTEKLKDKPKKQDREKQKEDRPPGGGEMKKR
QNGEYREEKGGKSEDSGHKDYRDRDGDRERDRDRDRERRQKEKERIRRQDEERRRRRERQ
DGENTYKKREEEGKKDKERVWEKRKHENTGESSVNAHPEKPSRDNKKEDSAKKDRLRNKD
RPAIQLYQPGARTRTRGGGGRDGDGQAELESKNSQEKVAE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaacacgcgtcccagagaaaggaaagtggaaataaaatgtgat
gaaaacgacaaaccagagaagccaaataaagagaagaaggaagctatgacaaagattgta
atccgacgtctgcctccaagtctaactaaagaagacttagaggaacaactgcagcctctt
ccagagctagattacctggagtttttctcaagtgatactagtcttttccctcatctgttt
gcaagagcatatctgaatttcaaaaatcaagatgacgtacttctcttcagagaccgtttt
gatggctacgtcttcattgataatcgaggacaagaatatcctgccattgttgagtttgca
ccattccagaaagttgctaagaaaagaagcaagaagaaagatgccaaaagtggaacgatt
gaagatgatgctgattacaaaaagtttttggagttctacaatggtgatgaggagaaattt
ccttccaatcctgagaccttacttgaggaaatagaggccaggacaaaagaactcagtgct
aaaaaaacgacacctctcttggacttccttaagaataaacagaggattagagaagagaag
aaagaagagaggagacggagagagttagaacgcaaacgcttgcgagatgaagaacggcgt
aagtggagagaggaggacagaagaaaaagaaaagaggctgagaaatttaaaaagggagaa
aaggcatctgataaggataaagaccaacctaaagatgaacagccaaaaatcaagctctta
agaaaaccagagaaagcagacaatggtgatactgagaagctaaaagacaagcctaagaaa
caagaccgagagaaacagaaggaagatcgacctcctggaggaggagagatgaagaagcga
cagaatggtgaatacagagaggagaaggggggcaaatcagaggatagtgggcataaagat
tacagagatcgtgatggagacagagagagagaccgggacagagacagagagcgaagacaa
aaagaaaaagaacgtatcagaaggcaggatgaggaacgaaggaggagaagggaacgtcag
gacggagaaaacacctacaaaaagagagaggaggaaggaaagaaggacaaggagcgtgtt
tgggagaaaagaaagcatgaaaacactggagagtcctcagttaatgctcatcctgaaaag
ccatcaagggacaacaaaaaggaagacagtgccaaaaaggatcgtctgagaaataaggat
cggcctgcgattcagctgtaccagcctggggcgaggacccgtacccggggaggaggaggt
cgagatggagatggacaggctgagctggagtccaagaatagccaagagaaagtggctgag
tga
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