Rhinichthys klamathensis goyatoka (western speckled dace): 130075336
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Entry
130075336 CDS
T09701
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03013
Nucleocytoplasmic transport
rkg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130075336 (upf1)
03015 mRNA surveillance pathway
130075336 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rkg03019
]
130075336 (upf1)
Enzymes [BR:
rkg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130075336 (upf1)
5.6.2.5 RNA 5'-3' helicase
130075336 (upf1)
Messenger RNA biogenesis [BR:
rkg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130075336 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130075336 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
130075336
NCBI-ProteinID:
XP_056095918
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcaaacgctcaccttcctggacacggaggaa
acggagcttctcggggccgacacgcagggctccgagttcgagttcaccgactttacattg
cccagccagacccaaacccaaggccagacccagagtcagctcgacaaccaggtaaacggg
cctgacggagttctgcccaacggagaagatgcagtggtgaagaccagccaacttctggcc
gagctgaactttgaagaggatgaggaagatacttactacactaaagatctgccagtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtttactgcaacaccagcaag
aaatggttttgcaatggccggggcaacacctctggcagtcatattgtgaaccatttggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagacggttctc
gaatgctataactgtggctgccgtaacgtcttccttctcggcttcatcccggctaaagca
gactctgtcgtggtgcttttgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagccgctcatccaggaccgttgctttctgtcctgg
ttggtgaagatcccatccgagcaggagcagctgagggcccgtcagatcacggcccagcag
attaacaaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctacgctacgaagatgcctatcag
taccagaacatttttggtcccctggtcaaactagaggctgactacgacaagaaactcaaa
gagtcccaaactcaagacaatataactgtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacttggctcctctctggaaaggaatcggacacgtc
atcaaagtcccggacaattatggagatgagattgccatcgagctgcgcagcagtgcaggc
gctcctgtggaggtgccgcacaacttccaggtggacttcgtctggaagtcgacatctttt
gaccgaatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtctggctac
atctaccacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagcttccc
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtgtatgctgtgaag
acggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggcaagacggtc
acctctgccactatagtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccgagtaacatcgcagtggaccagctaacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattcaccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgcccgagttgcagaaactgcagcaactg
aaggacgaaactggcgagctgtcgtcttctgacgagaaacgttaccgagctctcaaacga
accgcagagagagagctgctcatgaacgcagatgtgatctgttgcacatgtgtgggtgcg
ggtgaccctcgcctggcaaagatgcagttccgctccattctcatcgatgaaagcacccag
gccacggagcccgagtgcatggtgcccgtggtgctcggggccaaacagctgattctggtg
ggtgaccactgccagttgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctt
tctcagtctctgtttgagaggctggtggttctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggcactcagcgctttcccttcaaatatcttctatgagggttct
ctgcagaacggggtcactgccgccgatcgcatcaagaaaggctttgacttccagtggcct
cagccggataagcccatgtttttctacgtgactcagggtcaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaagctgctaatgtggagaagatcaccactcgtcta
ctgaaggccggagctaagcctgaccagattggcattatcacgccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactctaccaggag
gtggagatcgccagtgtagatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccacgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctttgtggaaccacctgctgaattactacaaggagcagaaggttctggtggag
ggtccgctcaataacctgagagagagtctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcacgtttcatgagtactgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgaccgcagcaacactggtcgtccatctaatatgtacttc
cagacccatgatcaggttggcatgatcgggaccggaccgaaccctatgggctccatgaac
attcccatcccgttcaatcttgtcatgccgcccatgcctccgcccgggtacctgggccag
gtgaacggacccgctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgccagaggaaccgtggcacgggcaaccatggcagtgggcaggccaacatgccgagcagc
caggccagtcaggatctggtgtcccagcccttctctcagggtcctctgacccagggctac
atcaccatgagccagccttcacagatgagccagcctggcctgtcccagcctgagctctca
caggacagctacctgggtgatgagtttaaatcccagatggatgtggcgctctcccaggat
tcaacctaccagggcgaacgggcttatcagcacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
