Rhinichthys klamathensis goyatoka (western speckled dace): 130102174
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Entry
130102174 CDS
T09701
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04512
ECM-receptor interaction
rkg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130102174 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130102174 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rkg00535
]
130102174 (agrn)
Proteoglycans [BR:
rkg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130102174 (agrn)
BRITE hierarchy
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
Laminin_EGF
SEA
EGF
CFAI_KAZAL
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
130102174
NCBI-ProteinID:
XP_056124075
LinkDB
All DBs
Position
Unknown
AA seq
2065 aa
AA seq
DB search
MGPFRRKTFYWPVWSFAVVFVLLSQRCHGSCSERDLEKREEEANVVLTGTVEEILNMDPV
HNTYSCKVRVWRYLKGKTMVNGEVLLDGGNKVMIGGFGDPHICDNQVATGDTRIFFVNLA
PEYMWPSHKNELMLNSSLMRITLRNLEEVEHCVEDHRMIIADKPVHFTPAPPPDGCRGKL
CGFGALCERDPADPSKGECVCKKIVCTSVVAPVCGSDSSTYSNECELEKAQCNTQRRIKV
MRKGPCALKDPCSEVTCSFGSTCIQSSDGLSAKCMCPLSCENVPKHVVCGSDGLDYQSEC
ELNMKACATQKNIRVHHQGRCDPCSDTLNSVSVACRVNPKTYKQFTFSPAESCLPDTTPI
CASDGRTYDSECQMERTALQSNLELKKVYLGSCKEKGSCPNDCKFNAKCLLENGEFRCSC
DPIQCDGTYKPLCGKDGKTYHNDCERRLEECRTKTDIPIKQQGPCDLNMESPCLKKTCEF
GAVCVVKNSEPVCECSDACSQDQDPVCGSDGHTYSNSCQMKAMGCALQKQIQMQHKGPCA
DESCTNCSFGAICDSQTGRCVCPKGCLETRQPVCGSDGVTYDNECKLNVKACTKQLDLRV
VAHGECKTCGSTVCSWGARCVQNKCECQQCTGQPVKPVCGSDGTTYNNDCELRLAVCKKQ
RKIELAKPGACDEDCGSGGSGSGSETCEQDRCKRYGGWWDEDTEDERCICDYTCQTVPHI
TVCGSDGNTYTSDCELKKSRCEKQMDLLLQSQGPCPDIISAPPELVSSQHCSETVYGCCQ
DNKTAALGVGLAGCPSVCQCNHYGSYGGTCDPSTGQCSCKPGVGGLKCDRCEPGFWNFRG
IVTENMSGCTPCNCDGVGSVRDDCEQMSGLCSCKPGVKGMKCNVCPDGSKMGANGCDKGP
QAPKSCDELVCHFGASCVEVKGQAHCECPSPDCDEKNKTKVCGSDGVTYADRCQLRTIAC
RQDKEITVQHLGQCKESIELTAKPTPFPTTHRTTPPTAHVKITKQRHGHTTTTTILKDLD
RFVVEALPPPRVVEAEKFFSSFTTHRPTTPYKPPRTSSPPEDSSPYFEESGSGEPSGDDE
MVSGMEESGEEPLGTTVATTTLPTAEERSSCDNTPFGCCPDGKTAAISSEGTNCPSTMRF
SGFLHLDKVEGQEVFYTPEMEDPKSELFGETARSIESALNELFHKSDVQKDFQSVRVRNL
APSNSIIAFVEAHFDPDTRFSVEDIEGALLKQLKASKDTGIVVKKPEEENIRINNYGLST
VPFFTTTTTTVASVTTPTTTTLSPTSAFTTLRPTTTRRPFTSRRTTTAAPATTTPSQAPT
TTVFLKNKPVAHANRPCDSQPCRHGGTCEEEDNDFTCICPAGRGGAVCEKVIKYFIPSFG
GKSYMAFQTMRAYHTVRIAMEFRASEMTGILLYNGQKSKKDFLSLALFEGNVELRFNTGS
GTASVISKVVVKPGRWHQLVVVRNRRNAMLSVDNEPMVEGQSPPGTDGLNLDTNLFIGGV
PEDMIVDVKERTSVSTGLVGCVRMLDVNNFVYNLQENGGSVLYGSAIGECGNNPCLPNPC
KNKASCQVKEAEMFHCKCVNGFSGPTCADAHNPCDPNKCHPSSRCQVLPEGGYKCECPMG
REGKHCEKVSDKGGAFIPYFTGDSFLELKGLHLYGQDLRQKFSMTVVLLANDSKGMIFYN
GQKTDGKGDFISLSLNDGILEFRYDLGKGPAVIRSKEKIKLNEWNTVNLERASRKGEISI
NGKDPVRGEAPKSRKNQHTDLNLKESLFVGGAPDFRKVARAAAIKDGFKGAIQKITLMGI
PILKADNALQSSDVSMYPYHPCSNDVCENGGRCNPQLDSYECVCRHGFAGQHCQDAIFEK
SAGDTEAIAFDGHTFIEYHNGVTKSQLTNEIPDPESLENPSDQSEKALLVNKFELSIKTE
ATHGLILWSGKGVERSDYIALAIVDGRVQMTYDLGSKPVVLRSSVRVNTNHWIRIKASRA
LRDGSLQVGNEAAVTGSSPLAATQLDTDGALWLGGLEELSVARRLPKAYSTGFVGCVKDV
IVDGVELHLVEDALNSPKILHCSAK
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctttccgcagaaagacgttttattggcccgtttggtcatttgctgttgttttt
gtgcttttgagtcagcgttgtcatggaagttgttcggaaagagacctggaaaaaagagaa
gaagaggcgaatgtagttttaaccgggactgtagaggagatcttgaacatggatccagtg
cacaacacttattcctgtaaggtcagggtatggcgctacctgaaaggcaagaccatggtg
aatggagaggtgctgctggacggaggaaacaaggtcatgatcggcggcttcggggacccc
catatttgcgacaatcaggtggccaccggagatacccgcattttctttgtcaaccttgcc
cctgagtacatgtggccgagccacaagaacgaactgatgctcaattcaagcctgatgagg
attactctccgcaacttggaggaggtagagcactgcgttgaagatcatagaatgatcatt
gcagataaacctgttcacttcacaccggctcctcctcccgatggttgccgagggaagctg
tgtggatttggagcgttgtgtgaaagagacccggctgacccctctaaaggagaatgtgtg
tgtaagaagattgtatgtacgtctgtggtggcgccggtgtgcggatccgactcctccacc
tattccaatgagtgtgagctggagaaggcccagtgcaatacacagagacgcatcaaagtg
atgcgcaaaggcccctgtgccctgaaggacccgtgcagtgaggtgacctgtagctttggc
agcacctgcatccagtcatcagacggtctgtccgccaagtgcatgtgtcctctgagttgt
gagaacgtccccaagcacgtggtgtgcggcagcgatggcctggactaccaaagtgaatgt
gagctcaacatgaaagcctgcgccacccagaagaacatccgtgtgcatcaccaaggccgc
tgtgatccttgcagtgacactctgaatagtgtgagtgtggcctgtcgagtgaacccaaaa
acctacaagcaatttaccttctccccagctgagtcctgtctgcccgacactacgcccatc
tgcgccagtgatggccgcacctacgatagcgagtgtcagatggagcggacggccctgcag
agcaatctggagctcaagaaggtctatttaggcagctgcaaggagaaagggagctgtccc
aacgattgtaagttcaacgccaagtgtttgctggaaaacggagagtttcggtgttcctgc
gaccccatacaatgcgacggcacgtacaagcccctgtgcggaaaggacggcaagacgtac
cacaatgactgcgagaggaggcttgaagagtgccggaccaagacagacattcccatcaaa
cagcaagggccatgtgatcttaacatggagagcccttgcctgaagaagacatgtgagttt
ggagccgtgtgcgtggtgaagaacagcgagcctgtgtgcgaatgctcagatgcgtgttcg
caggaccaagaccctgtttgcggcagcgatgggcacacttacagcaactcatgtcaaatg
aaggccatgggatgcgcccttcagaaacagatacagatgcagcacaaaggaccatgtgca
gatgagtcctgcaccaactgctcgtttggcgcaatctgcgattctcagactggccggtgc
gtgtgccccaaagggtgtttggaaacacggcagcccgtgtgcggcagcgacggggtgaca
tacgacaacgagtgcaagctgaacgtgaaagcctgcactaagcagctggatctcagagtg
gtggcccatggagaatgcaaaacttgtggcagcactgtttgtagctggggagcgcggtgc
gtgcagaacaagtgtgagtgtcagcaatgcacgggtcagccagtaaaacccgtgtgtggc
agcgacggcaccacctacaacaacgattgtgagctacgtctggcagtctgcaagaaacag
aggaagattgagttggccaaacctggcgcctgtgatgaagactgcggatcaggaggctca
ggctcaggatctgagacctgcgagcaggatcgttgtaaacgatatggcggatggtgggat
gaagacacggaggacgagcgctgcatatgtgactacacctgtcaaactgtgcctcacatc
acggtgtgtggctcagatgggaacacgtacaccagcgattgtgagctgaagaaatccagg
tgcgagaagcaaatggacctgctgctccagagtcaaggcccctgtccagatatcatatca
gctcctccagagctcgtttcctcccagcactgtagcgaaactgtttacggatgttgtcaa
gacaacaagaccgctgccctgggtgttggactggctgggtgtcctagtgtgtgtcagtgt
aatcattacggctcatacggaggcacctgtgacccctccaccggccagtgctcctgtaaa
cccggcgtcgggggactcaagtgcgaccgctgcgagcctggattctggaacttccgaggc
atcgttacagagaacatgagcggctgcacaccgtgtaactgtgatggagtgggctcggtt
cgtgacgactgtgagcagatgtcagggctgtgctcatgtaagcccggagttaagggcatg
aaatgcaacgtgtgccccgacggcagcaagatgggagccaacggctgtgacaaaggacct
caggcacccaagtcctgtgatgagcttgtgtgccactttggggcatcatgtgtggaggtg
aaaggacaggctcactgtgagtgcccatcgccagattgtgacgagaagaataagaccaag
gtatgtggttctgatggagtcacctatgcagaccggtgccagctgaggaccattgcgtgc
cgacaagataaggagatcactgtgcagcatttaggccagtgcaaagaatccattgagctg
acggccaaacccacccccttcccaaccacccaccgcaccacccctcccaccgctcacgtc
aagatcaccaaacagcgccatggccacaccaccaccaccaccattcttaaggatctggac
cgcttcgtggtggaggcactgcctccaccgagggtggtcgaggcagaaaagttcttcagc
tctttcaccacccaccgccccacaacaccctacaaaccaccccgcacctcatccccaccc
gaggactccagcccttactttgaggagtcgggcagtggagagcccagtggggacgacgag
atggtgagcggaatggaggagagcggagaagagccacttggtacaacagtagcaactacc
actcttcccacagccgaggagcgatcctcctgtgacaacacacctttcgggtgctgtccc
gatgggaagacagccgccatcagctctgagggcacaaactgcccctccaccatgcgtttc
agtggcttcctgcacctggataaggtagagggtcaggaggtcttctacacgcctgagatg
gaggaccccaagtcggagctgttcggtgaaacggcccggagcatcgagagcgctctgaat
gagttgttccacaagtcagatgtccagaaagacttccagagtgtccgtgtgaggaatctg
gcccccagcaactccataatagcctttgtcgaggctcactttgacccagacacaaggttc
agcgtggaggatattgagggagcccttctcaaacagctcaaggcatctaaagacactggt
attgttgtgaagaaacctgaggaggagaacattcgcatcaacaactatggtctttcaact
gttcctttcttcaccactacgacaaccaccgtggcgtctgtcacaactcccaccaccacc
acgctgtctcccacttctgcttttacaactctccgcccgaccaccaccagacggcctttc
accagccgcaggaccaccacagcagcaccagccaccaccactccatcccaggcccccaca
accacagtcttcctaaagaacaaaccggtggcccacgccaacaggccgtgcgactctcag
ccctgccgtcatggcggaacctgcgaggaggaggacaatgacttcacctgcatctgtccc
gcaggaagaggaggagccgtgtgcgagaaagttataaagtacttcataccatccttcggt
ggaaagtcttacatggctttccaaaccatgagggcctaccacactgtgcgcattgccatg
gagttcagggcttcggaaatgacagggatattgctctacaatggccaaaaaagcaaaaag
gacttcctgtctctggcattatttgaaggaaatgtggagcttaggtttaacactggttct
gggacggcttcagtcatcagtaaggtcgtggtaaagccgggtcgctggcatcagctcgta
gttgtgcgtaataggcgtaatgccatgctgagcgtggacaatgagccgatggttgaagga
caaagtcccccaggaacagatggactcaacctggacacaaaccttttcatcggaggagtg
ccggaagacatgatagtagatgtaaaggagcggacatcagtttcaacaggccttgtgggc
tgtgtccgcatgttggacgtcaacaacttcgtctataacctacaagagaatggcggtagc
gttctatatggctcggccattggcgagtgtggcaacaacccatgcctgccgaatccctgc
aagaacaaagcctcctgccaggtcaaagaagccgagatgttccactgcaaatgtgtcaac
ggtttctctggtccgacctgcgctgacgcccacaacccctgcgaccccaataaatgccac
ccatcatcacggtgccaagttcttccagagggaggttacaaatgtgaatgtccaatggga
cgtgaaggcaagcactgtgaaaaagtgtcagacaagggaggcgctttcattccttacttc
actggagactctttcctggagctcaagggccttcatctctatggccaggatctgaggcaa
aaattcagcatgactgtcgttctgttggccaatgactccaaaggcatgattttctacaat
ggtcaaaagacggacggcaaaggagatttcatctctctgtccctgaatgatgggatccta
gagtttagatatgacctgggcaaagggccggctgtaattaggagtaaagaaaaaatcaag
ctgaacgagtggaatacagtgaatctggagcgggccagcagaaagggagagatcagcatt
aacggcaaagaccccgtcagaggagaggcgccgaaatcacgcaagaatcagcacacagat
cttaatctgaaggagtcgctctttgtgggcggagcccctgatttccgcaaagtagccaga
gctgctgcgatcaaagatggtttcaaaggggccattcagaagattactctgatgggaatt
ccaatcctgaaagctgacaatgcccttcaatccagtgatgtgtccatgtatccctaccac
ccttgctccaatgatgtttgtgagaacggaggccgctgcaacccccagttggacagttat
gagtgcgtctgccgccatggattcgccggacagcactgccaggacgcaatattcgagaaa
tctgctggggacacagaggccattgcatttgatggccatacattcatcgaatatcacaac
ggagtcaccaagagccaactgaccaatgagatcccagaccctgagtcactggagaacccg
tctgaccagagtgagaaggccctgctggtgaataaattcgagctgagcatcaagactgag
gctactcatggtctgattttgtggagcggcaagggagtagaacgttccgactacatcgcc
ctcgccatcgtggacggccgtgtgcagatgacctatgacctcggctccaagcctgtggtg
ctgcgctcctctgtacgggtcaacaccaaccactggatacgaatcaaggccagcagagcg
ctcagagatggctcactgcaggttggtaatgaggcagctgtcactgggtcatcacccttg
gctgccacacagctggacacagacggcgctctctggttgggtggtctggaggagctgtcc
gtagcccgccggttgcccaaggcttacagcacaggctttgtcggctgcgtcaaagatgtg
atagtcgacggggtggaactacatctggtggaggacgccttaaacagtcccaaaatatta
cactgttcggccaaatag
DBGET
integrated database retrieval system
