Rhodococcus koreensis: JWS14_48740
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Entry
JWS14_48740 CDS
T07497
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rko
Rhodococcus koreensis
Pathway
rko03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JWS14_48740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rko03400
]
JWS14_48740
Enzymes [BR:
rko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JWS14_48740
DNA repair and recombination proteins [BR:
rko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JWS14_48740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSE86983
LinkDB
All DBs
Position
unnamed2:complement(461247..463607)
Genome browser
AA seq
786 aa
AA seq
DB search
MPTITIDGHRLNLTHLDKVLYPDTGTTKGEVIEYLRDIAPAMVPHLAQRPVTRKRWPDGV
DSNFFFERQAPASMPKWVPRLSVRHKDRTVEYPLIDSPAGLVLMGQLAALELHVPQWTVV
DGKPGPITRLVFDLDPGDGVELGDCARVALAVKEQLTAAGLSSYPVTSGSKGIHVYAELK
TELDTDPSQFARKIAKQLAKDWPDLVTATMAKTERAGKVFVDWSQNNPAKTTVAPYSLRG
RAEPTVAAPREWTELEDEGLRHLRFDEVLERYRQGGDLLSTSLNSLRTYRSKRRRGKTPE
PIPDTAPDTDTSTPDESTPDGELSFVIQEHHATTLHWDFRLEHDGVLVSWAVPKGVPVRP
GPNRLAVQTEDHPLDYRTFSGTIPDDQYGGGRVEIFDAGNYQPIKWEADKIVFELHGDRI
RGQYALIHTKANQWLLHKIKKANERPVPSSNGGSASQPASESTPLPRDLKPMLATLGTTE
DLTSMPEDEWSFEGKWDGVRAVGEVRDGKLRLHSRSGRDLTSTYPDLAWIGPALGEHKAV
LDGEIVTLDADDVTSFAALQNRLGLTRKADIERAAKKYPAEFFLFDILFLDGTSLLTKKY
VDRRHILDELATSCDGITVPARLSGDAQHALNESHRQGWEGIVAKRNDSPYLPGQRGRAW
IKVKNQRTQEVIIGGYRPGKGSRADTLGSLLLGVPDENGLRYIGRVGTGFTQPMLETLSG
KLQRLSRKTSPFSAELKPAERKDAVWVTPRLVGEISFTEWTTAGLVRHPAWRGLRPDKPP
DEVRIE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
ttgccgacgatcacgatcgacggacaccgactgaacctgacgcacctcgacaaggtgctg
tatccggacaccggtaccaccaagggtgaggtgatcgagtatttgagggacatcgcaccg
gcgatggtgcctcacctcgcgcaacgtcccgtgacgaggaaacggtggccggacggcgtc
gactcgaacttcttcttcgaacggcaggcgccggcatcgatgccgaagtgggttccgcgc
ctgtctgttcggcacaaggatcgcaccgtcgagtatcccctgatcgactcgcccgccggt
ctggtcctgatgggacaactcgccgcactggagctacacgtaccgcaatggaccgtcgtc
gacggcaagccggggcccatcacccggctggtgttcgatctcgatcccggcgacggcgtc
gaactgggcgactgcgcccgcgtcgcactggcggtgaaggagcaactgacggcggcgggg
ttgtcgtcgtatccggtcaccagcggcagcaagggcatccacgtgtacgccgagctgaag
acggaactcgacactgatccctcacagttcgcccggaagatcgcgaagcaactcgcgaag
gactggcccgacctggtgacggccaccatggcaaagacagaacgcgcgggcaaggtattc
gtcgactggagtcagaacaacccagccaagacgacggtggcaccgtactcgctgcgcggg
cgcgccgaaccgacggtcgcggcgccccgggagtggaccgaactcgaagacgagggactg
cgccacctgcgtttcgacgaagtgctcgaacggtaccgacagggcggcgacctgctgtcg
acctcgctgaactcgctccgcacctaccgatccaaacgacgccgcggcaagacacccgaa
ccgatacccgacaccgcccccgacaccgacacgtcgacgcccgacgaatcgactcccgac
ggcgaattgagcttcgtcatccaggaacatcacgccaccaccctgcactgggacttccga
ctcgaacacgacggcgttctcgtctcctgggcggtaccgaagggtgtacccgtcagaccg
ggacccaatcgcctcgccgtgcagaccgaggaccaccccctcgactaccggacgttttcc
ggcaccatccccgacgaccagtacggcggcggccgcgtcgagatcttcgacgccggcaat
taccaacccatcaaatgggaagccgacaaaatcgtattcgaactccacggcgaccgaatc
cgcgggcagtacgccctgatccacaccaaggccaaccaatggctcttgcataagatcaag
aaggccaacgaacgcccggttccctcgagcaacggcggaagcgcatcgcagccggcgtcg
gagagcaccccgctgccccgggacctgaagccgatgctcgccacgctgggaaccaccgag
gacctcacgtccatgcccgaagacgagtggtccttcgagggtaaatgggatggcgtacgc
gccgtcggcgaagtgcgcgacggaaagctccgcctccacagtcgttccggccgggacctg
acgtccacgtaccccgacctcgcctggatcggcccggcgctcggagaacacaaagccgtc
ctcgacggtgagatcgtcaccctcgacgccgacgacgtcaccagtttcgccgcactacag
aatcgcctcggcctgacgcgaaaagccgacatcgaacgcgcggcgaagaagtaccccgcc
gaattcttcctcttcgacatcctgttcctcgacggaacatcattgctgacgaaaaagtac
gtcgaccgacgccacattctggacgagctggccacgtcctgcgacggcatcaccgtcccc
gcccgcctgagcggcgacgcacaacacgccctgaacgaaagccaccgacaaggctgggag
ggaatcgtcgccaaacgcaacgactccccctacctacccggccaacgcggacgagcctgg
atcaaggtcaagaaccagcgcacccaggaagtgatcatcggcggctaccggcccgggaaa
ggctcccgcgccgacaccctcggctcactactcctgggtgtccccgacgagaacggactg
cgctacatcggccgggtcggcaccggattcacccaaccgatgctcgaaaccctgagcggg
aaactgcaacgcctctcccgcaaaaccagccccttctccgccgaactcaaacccgccgaa
cgcaaggacgcggtgtgggtgacaccgcgcctcgtcggcgaaatctcgttcaccgaatgg
acgaccgcgggactggtccggcaccccgcctggcgaggactgcgaccggacaagccaccc
gacgaggtccggatcgaatag
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