KEGG   Rhodococcus koreensis: JWS14_48740
Entry
JWS14_48740       CDS       T07497                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rko  Rhodococcus koreensis
Pathway
rko03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    JWS14_48740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rko03400]
    JWS14_48740
Enzymes [BR:rko01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JWS14_48740
DNA repair and recombination proteins [BR:rko03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     JWS14_48740
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QSE86983
LinkDB
Position
unnamed2:complement(461247..463607)
AA seq 786 aa
MPTITIDGHRLNLTHLDKVLYPDTGTTKGEVIEYLRDIAPAMVPHLAQRPVTRKRWPDGV
DSNFFFERQAPASMPKWVPRLSVRHKDRTVEYPLIDSPAGLVLMGQLAALELHVPQWTVV
DGKPGPITRLVFDLDPGDGVELGDCARVALAVKEQLTAAGLSSYPVTSGSKGIHVYAELK
TELDTDPSQFARKIAKQLAKDWPDLVTATMAKTERAGKVFVDWSQNNPAKTTVAPYSLRG
RAEPTVAAPREWTELEDEGLRHLRFDEVLERYRQGGDLLSTSLNSLRTYRSKRRRGKTPE
PIPDTAPDTDTSTPDESTPDGELSFVIQEHHATTLHWDFRLEHDGVLVSWAVPKGVPVRP
GPNRLAVQTEDHPLDYRTFSGTIPDDQYGGGRVEIFDAGNYQPIKWEADKIVFELHGDRI
RGQYALIHTKANQWLLHKIKKANERPVPSSNGGSASQPASESTPLPRDLKPMLATLGTTE
DLTSMPEDEWSFEGKWDGVRAVGEVRDGKLRLHSRSGRDLTSTYPDLAWIGPALGEHKAV
LDGEIVTLDADDVTSFAALQNRLGLTRKADIERAAKKYPAEFFLFDILFLDGTSLLTKKY
VDRRHILDELATSCDGITVPARLSGDAQHALNESHRQGWEGIVAKRNDSPYLPGQRGRAW
IKVKNQRTQEVIIGGYRPGKGSRADTLGSLLLGVPDENGLRYIGRVGTGFTQPMLETLSG
KLQRLSRKTSPFSAELKPAERKDAVWVTPRLVGEISFTEWTTAGLVRHPAWRGLRPDKPP
DEVRIE
NT seq 2361 nt   +upstreamnt  +downstreamnt
ttgccgacgatcacgatcgacggacaccgactgaacctgacgcacctcgacaaggtgctg
tatccggacaccggtaccaccaagggtgaggtgatcgagtatttgagggacatcgcaccg
gcgatggtgcctcacctcgcgcaacgtcccgtgacgaggaaacggtggccggacggcgtc
gactcgaacttcttcttcgaacggcaggcgccggcatcgatgccgaagtgggttccgcgc
ctgtctgttcggcacaaggatcgcaccgtcgagtatcccctgatcgactcgcccgccggt
ctggtcctgatgggacaactcgccgcactggagctacacgtaccgcaatggaccgtcgtc
gacggcaagccggggcccatcacccggctggtgttcgatctcgatcccggcgacggcgtc
gaactgggcgactgcgcccgcgtcgcactggcggtgaaggagcaactgacggcggcgggg
ttgtcgtcgtatccggtcaccagcggcagcaagggcatccacgtgtacgccgagctgaag
acggaactcgacactgatccctcacagttcgcccggaagatcgcgaagcaactcgcgaag
gactggcccgacctggtgacggccaccatggcaaagacagaacgcgcgggcaaggtattc
gtcgactggagtcagaacaacccagccaagacgacggtggcaccgtactcgctgcgcggg
cgcgccgaaccgacggtcgcggcgccccgggagtggaccgaactcgaagacgagggactg
cgccacctgcgtttcgacgaagtgctcgaacggtaccgacagggcggcgacctgctgtcg
acctcgctgaactcgctccgcacctaccgatccaaacgacgccgcggcaagacacccgaa
ccgatacccgacaccgcccccgacaccgacacgtcgacgcccgacgaatcgactcccgac
ggcgaattgagcttcgtcatccaggaacatcacgccaccaccctgcactgggacttccga
ctcgaacacgacggcgttctcgtctcctgggcggtaccgaagggtgtacccgtcagaccg
ggacccaatcgcctcgccgtgcagaccgaggaccaccccctcgactaccggacgttttcc
ggcaccatccccgacgaccagtacggcggcggccgcgtcgagatcttcgacgccggcaat
taccaacccatcaaatgggaagccgacaaaatcgtattcgaactccacggcgaccgaatc
cgcgggcagtacgccctgatccacaccaaggccaaccaatggctcttgcataagatcaag
aaggccaacgaacgcccggttccctcgagcaacggcggaagcgcatcgcagccggcgtcg
gagagcaccccgctgccccgggacctgaagccgatgctcgccacgctgggaaccaccgag
gacctcacgtccatgcccgaagacgagtggtccttcgagggtaaatgggatggcgtacgc
gccgtcggcgaagtgcgcgacggaaagctccgcctccacagtcgttccggccgggacctg
acgtccacgtaccccgacctcgcctggatcggcccggcgctcggagaacacaaagccgtc
ctcgacggtgagatcgtcaccctcgacgccgacgacgtcaccagtttcgccgcactacag
aatcgcctcggcctgacgcgaaaagccgacatcgaacgcgcggcgaagaagtaccccgcc
gaattcttcctcttcgacatcctgttcctcgacggaacatcattgctgacgaaaaagtac
gtcgaccgacgccacattctggacgagctggccacgtcctgcgacggcatcaccgtcccc
gcccgcctgagcggcgacgcacaacacgccctgaacgaaagccaccgacaaggctgggag
ggaatcgtcgccaaacgcaacgactccccctacctacccggccaacgcggacgagcctgg
atcaaggtcaagaaccagcgcacccaggaagtgatcatcggcggctaccggcccgggaaa
ggctcccgcgccgacaccctcggctcactactcctgggtgtccccgacgagaacggactg
cgctacatcggccgggtcggcaccggattcacccaaccgatgctcgaaaccctgagcggg
aaactgcaacgcctctcccgcaaaaccagccccttctccgccgaactcaaacccgccgaa
cgcaaggacgcggtgtgggtgacaccgcgcctcgtcggcgaaatctcgttcaccgaatgg
acgaccgcgggactggtccggcaccccgcctggcgaggactgcgaccggacaagccaccc
gacgaggtccggatcgaatag

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