Candidatus Rickettsia kotlanii: FLA4_12400
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Entry
FLA4_12400 CDS
T09157
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rkt
Candidatus Rickettsia kotlanii
Pathway
rkt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rkt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FLA4_12400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rkt03400
]
FLA4_12400 (mfd)
Enzymes [BR:
rkt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FLA4_12400 (mfd)
DNA repair and recombination proteins [BR:
rkt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FLA4_12400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BDU60830
LinkDB
All DBs
Position
complement(1199992..1203357)
Genome browser
AA seq
1121 aa
AA seq
DB search
MLQQKVPAAAKSFFAIDNFTKNLKQDLILSASNEEEALQLYKQALFFSSNENIYYFPSYD
TIPYDHTSPNANISSRRAETLTKLTTNNSNSKLLITHTANLLNRLPPKDFFAKYFLKLSP
KMKFTTDELAMFLVENSFTRNASSIDAGEFAVRGEIIDIILPGPKAYRIHFSWGYIESIK
EFDIDTQISTKSCKELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNALYEAVISGRK
FAGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNDFYSARSEANKLKFN
SFYPTLSPTSLYFTASEITELLERKNNILLTFENSEQASLIENIAATSFIEKKTVFDKLF
EVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVGIIPLNQSF
YTKEYLFITASELLEEKPGSTNTDRKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALE
IKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVAWQRSKAKLKNRIKE
IALHLIQIAAKRKLNSSAPIEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLMD
RLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN
IKQLSSIISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVSQK
EFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVIPFDPVIIR
DALLREHFRGGRSFYVVPRIKDIEDIERQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYA
GKFNILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRGRIGRGKMRGYAYLTVASH
KKMTLHSLRRLEIIQNSCTLGSGFTIASRDMDLRGFGNLVGEEQSGQIKEVGTELYQEML
EEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDSYVADAALKLGLYRRIGNLSTEIEVETF
KDEMIDRFGLLPIAFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKILKF
VSTYSDQAKIKPDNKLVYIKKLVDKNIIVEANQLLWNLSEV
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaagtcccggcagctgctaaatctttctttgcaattgataattttact
aagaatcttaagcaagatctcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttatttttttcttctaatgaaaatatttattattttccaagctatgat
accattccttatgaccatacgtcaccaaatgccaatatctcatctagacgtgcagaaaca
ttaaccaagctaacaacaaataatagtaatagcaaattactcatcactcatacagcgaac
ttattaaacagattaccaccgaaagatttttttgctaaatattttttgaaattatcccct
aaaatgaaatttactacggatgagcttgctatgtttctagtagaaaatagttttacaaga
aatgcgagtagcatcgatgccggggaatttgcggttagaggcgaaatcattgatataata
ttgcccggtcctaaagcttatagaattcattttagctggggttatattgaatcaataaaa
gaatttgatattgatacacaaatttcgactaaatcttgcaaggagcttattattagtcct
gcaaatgagatagttttaaatagtgaaactataggtaattttaagaataattacttacga
aattttggagttaatcatactgataatgctttatatgaggcggtaatatctggaagaaaa
ttcgcaggatatgaacaattactcccgttattttacgattcctgctctaacttaatagat
tatttaaacgatcctattttcatattcgataatttgtcaaaacaagccattttagagttt
gaacatagttataacgatttttattcagcaaggtcagaggcaaataaacttaaatttaat
agtttctatcccaccctttcaccgactagcttatactttaccgcttctgaaataacggaa
ttactagaacgaaaaaataatatactacttacttttgaaaactcagagcaagctagctta
attgaaaatatagctgctacaagttttatagaaaagaaaacggttttcgataaattattt
gaggttattaaagcaaattctcataagaaaattattataggctcaagcgttttaagtagt
tttgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaataaa
ttagatgaggctaaggcttcaataataaatgttgggataattcctttaaatcaaagcttt
tatacaaaagaatatttatttattaccgctagcgaattattagaagaaaaacctggttct
acaaacactgacagaaaacttaaaaatatcttgttggagcttgataatttagctgaaggc
gaatttgttgttcacaaagatcatggaatagggcagtttttaaagctagaagctttagaa
atcaaaggtaaaccacatgattttttaaagattttatatgccggtaatgataaattatat
ataccagttgaaagtatagaggtaataaaaaaatatggcaatgataatgcggagcttgat
aagctgggtagcgttgcatggcaaagaagtaaggcaaagcttaaaaatcgtataaaagag
atagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgctcccatt
gaatttgaccttgaagaatatgataaattttgtgctaattttcctttcagcgaaacggaa
gaccaattaaccgctataaacgatattaaagaagatctaagaaacggtatgttaatggat
aggttaatatgcggtgatgtcgggtttggtaaaacagaggtagcaatgcgtgccgtcttt
atggtagcaaaatctctaaatgaacatttacctcaagtagccgtagttgtaccgacaact
attttatgtagccaacatttttcaaggttcatagaaaggttcaaaggttttggtttaaat
atcaagcaattatctagcatcattagttctaaagaagcaaaaattataagatcggagctt
gaaagcggtaaaataaatataataataggcactcattctttattacataaaaatataaaa
ttctttaatttgaaattgttaataatcgatgaagaacaacatttcggtgtcagtcaaaaa
gaatttcttaaatcactaaaatcctcttcccatgtacttgcaatgtcggcaacaccgatt
cctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacaccg
cctctaaacaggctggaagttcgtacctcggttataccgtttgatcccgttattatcaga
gatgcattattacgcgaacattttagaggcggaagaagcttttatgtagtcccaagaatt
aaagatatagaggatatcgaaagacaattaaaacaaattgtgccggaattaagctataaa
atagcttacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttatgcc
ggcaaattcaatatactagtctcaactactattatagaatcagggattgatatagccgag
gcaaataccatgatcatacataaggctgatatgctgggtcttagtcagctatatcaattg
cgtggtcgcataggtcgaggtaaaatgcggggttatgcctatctaacggtagcaagtcat
aaaaagatgacattgcactccttaagacgcttagagataatacaaaatagttgtactttg
ggctcaggttttactattgcaagccgtgatatggatttacgaggtttcggtaatttggta
ggtgaagaacaatcaggacaaattaaagaagtaggtacagaactctatcaagaaatgcta
gaagaacaaatagctatttttaaagatgaaccgattgtttcagaacaaccatttatcccg
actattaatttaggattatccgtctttattccagatagttatgtagccgatgcagctctt
aaacttggactatatagaagaataggtaatttaagtacagagatagaagtagagacattt
aaagatgagatgattgatagattcggtttactaccgattgcatttaataatttacttgat
attgtaaaaataaaactattatgctttaaattaaatattgaaaatctagattcaggagat
aacggatttgtaattaaattttataaaaatgccgatatgactgataaaattttaaaattc
gttagtacttactctgatcaggcaaaaatcaaaccagataataaattagtatatatcaag
aaattagtagataaaaatataattgttgaggcaaatcaactactttggaatttatcagag
gtgtag
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