Rhodomicrobium lacus: QMO75_05810
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Entry
QMO75_05810 CDS
T09241
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlac
Rhodomicrobium lacus
Pathway
rlac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QMO75_05810 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlac03400
]
QMO75_05810 (ligD)
Enzymes [BR:
rlac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QMO75_05810 (ligD)
DNA repair and recombination proteins [BR:
rlac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QMO75_05810 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WKW51994
LinkDB
All DBs
Position
complement(1306739..1309582)
Genome browser
AA seq
947 aa
AA seq
DB search
MPKAPASAPAKSKRSAPVVSAKGDLTRYRQKRDFTKTPEPSGTRRAAKIPALRFVIQKHA
ARRLHYDLRLELDGVYKSWAVTKGPSLDPSEKRLAVHVEDHPLDYGDFEGIIPPGEYGGG
TVMIWDRGTWEPEGDPEKGYAKGHLAFTLHGEKLKGRWHLIHIKPRPGEKDQQWLLFKSD
DDYARAEADGDILEDAPDSVATGRSMDEIARDGEAVWSGKAGLVKGDLSPVDGAEEAEAP
PKRKQTRTMADATGAVGAIRAERCESTRAASRKPAGAKEKAEVSPRAAKGIAGAKKAPFP
GFVVPCLAQLCGRAPDGDNWLHEIKFDGYRLMAMIENGRVRLMTRSGLDWTERFPALAAT
FAAFPVAAAIVDGEAVVEDHTGVSNFSALQEALSTRKSTAEIVFYAFDLLYLDGYDLRGA
SLEARKDALAPLIEGAGTQALRYSDHVVGHGPAMVENACRFGLEGIVSKRIDAPYRSGRH
GAWLKTKCTNLQEFVVGGYAPSTAMRGAIGSLALGAYDDGKLLHVGRAGTGFTQGTAKAL
FKQLQPLRRATSPFANALSSEEKRGLVYVEPKLVAEVEFRGWTGDRHLRHAAFKGLREDK
SATEVLFEMPRSQTDPDAGRARPGSRRNAPSTSRAVPAKGGNVDFEGIRLTHPDRVLWEG
QGLTKLGLAEYYADVAGFMMPFITGRPLALVRCPNGQGGDCFYQKRSFAGLSDAVEVVPI
ADKEGDTEALVIHDLRGLINLVQANVLEIHPWGARIDDLERPDTLIFDLDPGDGVDFGAV
MDGAREVRQRLADLRIESYVKTTGGKGLHVVSPLVPDLGWDEVKAFAQGIAQAMESDSPQ
RFVSTMAKKARDGRIYVDYLRNGRGSTAIAPYSTRAREGAPVATPLRWEELTPALAPRRF
TVETVGRRLDSLKSDPWAGYLDNPQRIESGGVRRSKRRQRSGSAGSI
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagcccccgcttcagcaccggcaaaatcgaagcggagcgcgcccgtcgtctcc
gcgaagggcgaccttacgcgctaccgccaaaagcgcgacttcacgaagacgccggagcca
tccggcaccaggcgagcggcgaagatcccggctctgcgcttcgtcatccagaagcacgcg
gcgcggaggctgcattacgacctgcgccttgaactcgacggcgtttacaagagctgggcg
gtgacgaaggggccgagcctcgatccgtccgaaaagcggctcgcggtgcatgtcgaggat
cacccgctcgactatggcgatttcgagggcatcattccgccgggcgagtatggcggcggc
accgtgatgatctgggatcgcggcacgtgggagccggaaggagatcccgaaaagggctac
gcgaaaggccatctcgcctttacgctgcacggcgagaagctcaagggccgctggcacctc
atccacatcaagccgaggccgggcgagaaggaccagcagtggctcctgttcaagtccgac
gacgactatgcgcgcgccgaagccgacggcgacatcctcgaagacgcgcccgattcggtg
gcgaccgggcgtagcatggatgaaatcgcgcgcgacggcgaggcggtctggtccggcaag
gcggggctcgtgaaaggcgatctttcgcccgtcgacggcgcggaggaagcggaagcgccg
ccgaaacgcaagcaaacccgaacgatggccgatgcaaccggcgcggtgggagccatccgc
gccgaacgctgcgaatcgacgcgtgcggcttcacgcaaacccgctggtgcgaaagaaaag
gccgaggtctcgcctcgcgcagcaaagggcatcgcgggcgcgaagaaagcgccgttcccc
ggcttcgtcgtgccgtgcctggcgcagctttgcgggcgggcccccgacggcgacaattgg
ctgcacgaaatcaagttcgacggctatcgactgatggcgatgatcgagaacggacgcgtt
cgcctcatgacgcgaagcggcctcgactggaccgagcgtttccccgccctcgccgccacg
ttcgccgccttccccgtcgcagcggccatcgtcgacggggaggcggtggttgaggatcac
acgggcgtgtcgaatttctctgcactgcaggaggctttgtccacgcgcaaaagcaccgcc
gaaatcgtcttctacgccttcgaccttctctatctcgacgggtacgacctgaggggcgcg
agccttgaagcgcgcaaggacgcgctcgcgccgctcatcgaaggcgccggaacgcaggcg
cttcgctattcggatcatgtcgtgggtcatggccccgccatggtggaaaacgcctgccgt
ttcggtctcgaaggcatcgtatccaaacgaatcgacgcgccctatcgctccggccggcac
ggggcatggctcaagacgaaatgcacgaacctgcaggaattcgtcgttggcggttacgcg
ccgtcgacggcgatgcgcggcgccatcggcagcctcgcgctcggcgcttacgacgatggc
aaactcttgcatgtgggacgcgccggaaccggtttcacgcaaggcacggcaaaggcgctt
ttcaagcagcttcagcccttgcggcgtgcaacctcgcccttcgccaatgcgttgtcgtcg
gaggaaaagcgagggctcgtttatgtcgagccgaagctcgtcgccgaggtcgagtttcgc
ggctggaccggcgatcgccatctgcgtcacgccgcattcaaggggttgcgcgaggacaag
tccgcaacggaggttcttttcgaaatgccgcgctcgcagacagaccccgatgccgggcgc
gcgcgcccgggttcacgccgaaacgccccgtcgacatcccgagccgtacccgccaagggc
ggcaacgtcgatttcgaggggattcgcctgacccatcccgaccgcgtgctatgggagggg
caggggctgacgaaactcggccttgccgaatattacgcggacgtcgccgggtttatgatg
ccgttcattacaggtcgcccgctggcgctcgtccgctgcccgaacgggcagggcggggat
tgcttctatcagaagcgatccttcgcgggcctctccgacgccgtcgaggtggtgccgatt
gccgacaaggagggcgacacggaggcactcgtcatccacgacctgcgcggccttatcaac
ctcgtgcaggcgaacgtgctggagatccatccctggggcgcgcgcattgatgaccttgag
cgccccgacacgctgattttcgatctcgatccgggcgatggcgtcgacttcggcgccgtg
atggatggcgcccgcgaggttcggcagcggcttgccgatctccgcatcgagtcgtacgtc
aagacgacggggggcaaggggctgcatgtggtgtcgccgctggtgcccgatctcggctgg
gacgaggtgaaggctttcgcccaaggcatcgctcaggcgatggagagcgactcaccgcaa
cgcttcgtctcgacgatggcgaagaaggcgcgcgacggaagaatctatgtcgattatctc
cgcaacgggcgcggttcgactgccattgcgccctattcaacgcgagcgcgagagggagcg
cctgttgcaacgccgctccgttgggaagaactcacgcccgctcttgcgccgcgaagattt
accgtcgagaccgtgggcaggcggctcgattcgttgaagagcgatccgtgggccggctat
ctcgataatcctcagcgcatcgaaagcggcggcgtgcggagatcgaaacgccgccagaga
tccggatcggcgggctcgatttga
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