Rhizobium leguminosarum bv. trifolii WSM1689: RLEG3_09680
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Entry
RLEG3_09680 CDS
T03009
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlb
Rhizobium leguminosarum bv. trifolii WSM1689
Pathway
rlb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG3_09680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlb03400
]
RLEG3_09680
Enzymes [BR:
rlb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG3_09680
DNA repair and recombination proteins [BR:
rlb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG3_09680
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHF87422
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All DBs
Position
unnamed:607853..608896
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AA seq
347 aa
AA seq
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MTRPRRPILPLLDESHSTLQSRPIRKRNPDQPSLPFDPMPSRIEPCLALLKPTVPVGPDW
LYEVKLDGYRLAMHIEPKGVRVITRGGHDWTHRFPTIAAAAKELGVTTAILDGEAVVLDE
HGRSDFGALQRSLGGRGGKRVSTEAILVAFDLLYLDGHDLTGTELDVRRHLLEDLMPDGD
DQNIRLSEEIELPAEDLLEHACHHHLEGIIAKHRDWPYRSGRTGDWLKIKCVQSESFMIV
GYEQSASARGGIGSLLLAGRRGLDWIYVGSVGTGFTASDAEFLKKTLDRLKTSQPVVPLK
GKRLVLVQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVFDMS
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcccgcgccgcccaattctgcccttgctcgacgagtctcactcaaccctgcag
tctcgtccgatccgcaagcgcaatcctgaccagcccagtctgcccttcgatccaatgccg
tcgcgcatcgagccttgcctcgcactgctgaagccgacggtgcccgtagggccggattgg
ctctatgaggtgaagttggatggctatcgattggcaatgcatattgagccgaagggcgtg
cgggtcatcacccgcggcggccatgactggacccaccgcttccccaccatcgccgcggca
gcaaaagagcttggcgtaacgaccgccattctcgatggcgaggccgttgtactcgatgag
cacggccgctcggattttggcgccctgcagcgttcgctcggcgggcggggcggcaagcgg
gtgtcgaccgaggcaatcctcgttgccttcgaccttctctatctcgatggacacgatctg
acaggcaccgagcttgacgtacgccggcacctgcttgaagacctaatgccggacggcgac
gatcagaatatccgcctctccgaggagatagagctgccggccgaagacctcctcgagcac
gcctgccatcatcatctggaaggcatcatcgccaagcaccgcgactggccctatcgcagc
ggtcgcaccggcgattggctgaaaatcaagtgcgtgcagagcgagagcttcatgatcgtc
ggctatgagcagtctgcatccgcccgcggcggcatcggcagcctattgctggccggcaga
cgaggcctcgactggatttacgttggctccgtcggaaccggattcactgccagcgacgcc
gaattcctgaaaaagacgttggaccggctgaagacgagccagccggtcgttcccctgaag
ggcaagcgtcttgtcctcgtgcagccgacgctgatcgccgagatcgagtttcgcggctgg
acggatgacggcaatctccgccatgcctcctacaaggggctgcgcgaggttcaggacaac
gccgccgtcttcgatatgagctaa
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