Rhizobium johnstonii: pRL120628
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Entry
pRL120628 CDS
T00402
Symbol
gabD5
Name
(GenBank) putative succinate-semialdehyde dehydrogenase [NADP+]
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
rle
Rhizobium johnstonii
Pathway
rle00250
Alanine, aspartate and glutamate metabolism
rle00310
Lysine degradation
rle00350
Tyrosine metabolism
rle00650
Butanoate metabolism
rle00760
Nicotinate and nicotinamide metabolism
rle01100
Metabolic pathways
rle01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
pRL120628 (gabD5)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
pRL120628 (gabD5)
00310 Lysine degradation
pRL120628 (gabD5)
00350 Tyrosine metabolism
pRL120628 (gabD5)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
pRL120628 (gabD5)
Enzymes [BR:
rle01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
pRL120628 (gabD5)
1.2.1.20 glutarate-semialdehyde dehydrogenase
pRL120628 (gabD5)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
pRL120628 (gabD5)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
CAK12338
RhizoBase:
pRL120628
UniProt:
Q1M3I6
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Position
pRL12:complement(684379..685848)
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AA seq
489 aa
AA seq
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MENRMNGLRDSSLLRQQGLIDGEWRGAAAGHTIEVIDPATQHVLGTVPDMDGADTRAAIV
AAEKAFGPWRAKTNAERGALLEAWHDLMLDNIEDLALILTREQGKPLTEARGEIRYGASF
IRWFSEEARRIGGTTIPSPTADRRIVVLKEPVGVSAIITPWNFPNAMITRKVGPALAAGC
TVVVKPSDLTPFSALALGVLAERAGIPKGVINIVTGMPAGIGDELMANQTVRKISFTGST
RVGSLLMRGAADSVKRLSLELGGNAPFIVFDDADLDLAVEGAIASKFRNGGQTCVCANRL
LVQSGVYEAFAAKLSARVSAMKVGAGTDAGTDIGPMINKAAIEKIRRHVDDAVEKGARIL
ATAGFMPEGDQYAVPMVLGGATTEMQLASEETFGPVAPLFRFDNEEEAIRIANATPFGLA
AYFYTGSLKRSWRVAEALEFGMVGLNTGAISTEVAPFGGVKQSGLGREGAQCGIEEYLEM
KSFHIGGLA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaatgaacggattgagggatagcagcctgcttcgtcagcagggactgatc
gacggagaatggcggggggccgcggccgggcacacgatcgaggtgatcgatccggcgacc
cagcatgtgctgggcacggtacccgacatggacggagccgatacgagggcggcaatcgtg
gcggcggaaaaggcctttggtccatggcgcgcaaagaccaatgccgagcgcggcgcattg
ctggaagcctggcacgatctgatgctcgacaatatcgaggatctggcgttgatcctcacc
agggagcagggcaagccgctgacggaagcgcgcggcgaaatccgctatggcgcctcgttc
atcagatggttttccgaggaggcgcgccgcatcggcggaacgaccattccctcgccgacg
gcggaccggcggatcgtcgttctgaaggagcctgtcggcgtgtcggcgatcatcacgccg
tggaattttccgaatgcgatgatcacccgcaaggtcgggccggcgctcgccgcaggctgc
accgtcgtcgtcaagccatcggacctgacccccttttcggcgctggcgctcggtgtattg
gcggagcgcgccggcatcccgaagggggtgatcaatatcgtcaccggcatgccggccggc
atcggcgacgaactgatggcgaaccagaccgtgcgcaagatctctttcaccggctcgacc
cgcgtcggctcgctgctgatgcgcggcgcggccgacagcgtcaagcggctcagcctcgaa
ctcggcggcaacgcgcccttcatcgtcttcgacgatgccgatctcgatctggccgtggaa
ggcgcaatcgcctcgaaattccgcaatggcgggcagacctgcgtctgcgccaaccggctt
ctcgtccagtccggcgtctacgaggcctttgccgccaaactttccgcgcgcgtatcggcc
atgaaggtcggggccggcacggatgcaggcaccgatatcgggccgatgatcaacaaggcg
gcgatcgagaagatcaggcgacatgtcgacgatgcggtggaaaagggagcgaggatcctc
gccacggcaggtttcatgcctgaaggcgatcaatatgcggtgccgatggtgcttggcggt
gcgacgaccgagatgcagctcgccagcgaagagaccttcggacctgttgccccgcttttc
cgtttcgacaacgaggaagaggcgatccgcattgccaacgccacgcccttcgggcttgcg
gcctatttctacaccgggagcctgaaacgctcctggcgtgtcgccgaagcgctcgaattc
gggatggtcggcctgaacacaggggcgatctcgaccgaggtcgctcccttcggcggcgtc
aaacaatccggtcttggccgcgagggcgcgcagtgcggcatcgaggaatatctcgaaatg
aagagcttccacatcggcgggctcgcctga
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