Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_6989
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Entry
Rleg_6989 CDS
T00926
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg_6989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlg03400
]
Rleg_6989
Enzymes [BR:
rlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg_6989
DNA repair and recombination proteins [BR:
rlg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg_6989
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACS60012
UniProt:
C6B7F4
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All DBs
Position
pR132502:complement(425320..426384)
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AA seq
354 aa
AA seq
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MTKPPKPKPLLQDVDKSVRSRPSKPRNPAQPNLPLDPMPDRIDPCLALLKPKPPKGPQWA
FEVKWDGYRLSVHVEPTGIRILTRGGHDWTHRFPAIQQAALWLPVGSAILDGEAVVLDEQ
GRSDFGLLQQSLGGRGGKKRSSDAIFMAFDLLYFDGHDLRNSELDMRRHLLADLVPTGEQ
GDIRLSEEIEADGDQLLASACEHGLEGIIAKRRDAPYRSGRLGDWLKIKCIQSDSFVIVG
YERSTVARAGIGRLLLAARKGDDLVYVGGVGTGFNERSAAELREQMDKLIIGKATVDTGR
KRNAVFVDPKIVAEIEYRAWTHDGKLRHASYKGLRDVQDNAIPYQPRGRPGDRG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagccgccgaaaccaaagccgctcctgcaggatgttgacaagtcggttcgatcc
cggccgagcaagccacgaaatcccgcacagccgaaccttcccctcgaccccatgccggat
cgcatcgatccatgcctcgctctcctgaagccgaagccgcccaaagggccgcaatgggcg
ttcgaagtgaaatgggatggctatcgcctttcggttcatgtcgagccgacgggcattcgc
atcctgacgcgtggcggccacgactggacgcatcgcttccccgcaatccaacaagcggcc
ctatggcttcctgttggctcggcaatcctcgacggcgaggctgtggttctcgacgagcag
ggccggtcggatttcggcctgctgcaacagtcgctcggcggcaggggcggcaagaagagg
tcaagcgacgccatcttcatggcttttgatctgctctatttcgacggtcacgacctcagg
aattccgaactcgacatgcgccggcacctgctcgcggatttggtgccaaccggcgagcag
ggagatatccggctctcagaggagatcgaggccgacggcgatcagctgctggcaagcgcc
tgcgaacacgggttggaagggatcatagccaagcgccgggacgcgccttatcgttccggc
cggcttggagactggctgaagatcaaatgcatccagagcgacagttttgtgatcgtcggt
tatgagcgatccacagtagcgcgcgccgggatcggccggctgctgctcgccgcgcgcaaa
ggagacgacctcgtctatgtcggaggagtggggaccggcttcaatgaacgatccgccgcc
gagctccgggagcagatggacaagctgattattggcaaggctactgtggatacaggacgg
aagcgaaatgcagtcttcgtcgatccgaagattgttgccgagattgaatatcgagcctgg
acccatgacgggaagctgcggcatgcgtcgtacaaggggctccgcgatgtgcaggacaat
gcgattccttaccaaccacgcggacgcccgggcgaccgtggttga
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