Rhizobium lentis: J0663_27740
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Entry
J0663_27740 CDS
T07189
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rln
Rhizobium lentis
Pathway
rln03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J0663_27740 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rln03400
]
J0663_27740 (ligD)
Enzymes [BR:
rln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J0663_27740 (ligD)
DNA repair and recombination proteins [BR:
rln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J0663_27740 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
CTK3_C
Motif
Other DBs
NCBI-ProteinID:
QSW96784
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All DBs
Position
p2:298252..300900
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AA seq
882 aa
AA seq
DB search
MASDKLSSYRSKRDFQKTAEPSGERRIKKSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRERSKRTNWLLIKHHDEFSVEENGASILEEN
VTSVASGRSMEEIAAGKGRKPKPFMVEGGKVQADAVWDSNHGLAAEERQSEAKGGKRAGA
ATAVYLPGFIAPQLCQKLERPPGGDGWIHEIKFDGYRIQMRVIDGEATLKTRKGLDWTAK
YPEIAGAASALPDCIIDGEICALDEHGAPDFAALQAALSEGKTGDLVYFAFDLLYDGGED
FRLKPLTERKMRLQELLTEAGNDPRIRYVEHFTGGGDAVLRSACKLSLEGIVSKKADAAY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFSEDHFVYVGRVGTGYGARKVE
TLLPKLKALETAKSPFTGIGAPKKQAEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRE
DKAAREVEAERPLRSSRTEVVEPTPRAIQTPARRRGQKADVMGVLISNPDKPLWPDVNGG
DPVTKEELARYYEAVGDWMIEHLKGRPCSIIRAPDGVGGEQFFQRHAMPGQSKLLELIKV
FGDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVPFSTVVA
AAREMRDRLEDLGLTSFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHDVCQQMARNN
PDLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWKDYCEGQRPLEQAIKKLGRTGKHAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctatcgagctaccgatcgaaacgcgatttccagaagaccgctgag
cccagcggtgaacggcgcatcaaaaagagcaaccgccgccgctttgtgattcagaagcac
gatgcgacacgtctgcattacgacctgcggctcgagctagacggcgtgttcaagagctgg
gctgtcaccaaaggtccatcgctcgatccgcacgacaagcgcctggccgtcgaggtcgag
gatcatccgctcgattatggcgacttcgaaggcacgattccgaaaggccaatatggcggc
ggcacggtcatgttgtgggatcgcggctattgggagccggagggaaagaagagccctgaa
caggcgcttgccaagggcgacttcaagttcaccctcgaaggcgagcgcctgcacggcagc
ttcgtgcttgtgcgcatgcgcaacgatcgcgagcgcagcaagcgcaccaattggctgttg
atcaagcatcacgacgagttctcggtggaggagaacggtgcttccatcctggaagagaac
gtcacctcggtggcttcaggacgcagcatggaagagatcgcagccggcaaggggcgtaaa
ccgaagcccttcatggtggagggcggcaaggtgcaggcggatgccgtctgggacagcaac
cacggactggccgcagaggagcggcagtcggaggcgaaaggcggaaagcgcgccggcgcc
gcaacggcggtttatcttccgggcttcatcgcgccgcagctctgccagaagctggagcgg
ccgcccggcggggacggttggatccacgagatcaagttcgatggatatcgcattcagatg
cgggtgatcgacggcgaggcgacgctgaaaaccagaaaaggtctcgactggacggccaag
taccccgagatcgccggggcggcgtccgcgcttccagactgcataatcgatggtgagata
tgcgctctcgatgagcacggcgcgcccgacttcgccgcgcttcaggcggcgctgtcggaa
ggcaagaccggcgacctcgtctacttcgccttcgatctgctctatgacggcggcgaggat
ttccgcctcaagcccctcacggagcgaaagatgcgattgcaggaactcctcacggaggcc
ggcaatgaccctcgcatccgctacgtcgagcattttacaggcggcggcgacgccgtgctc
aggtcggcatgcaagctatcgctggaaggcatcgtgtcgaaaaaggccgatgccgcctat
cagtccgggcgaacggaaagctgggcgaaatcgaaatgccgtgcggggcacgaggtggtc
atcggcgcctatgccaagaccaacggcaagtttcgttcgcttctcgtcggcgtcttcagc
gaggatcatttcgtctatgtcggccgtgtcggaaccggatatggcgccaggaaggttgaa
acgctgcttccgaagctgaaggcgctggagacggcgaagtcgccgttcaccggtatcggc
gctccgaagaagcaggctgaggtggtctgggtgaagccggagcttgtcgccgagatcgaa
ttcgagggctggaccgccgatggcctcgtccggcaggcggcctttaaaggcttgcgcgag
gacaaggctgccagggaagtcgaggcggagcgaccgctaagatcctcgagaaccgaagtt
gtagagccgaccccgagggccatacaaacaccagcgcgccgcaggggccagaaggccgat
gtcatgggtgtgctcatttcaaacccggacaagccattgtggccggacgtcaacggtggt
gatccggtaacaaaggaagaattggcccgctattacgaggcggtcggcgactggatgatc
gagcacctcaagggcaggccctgctccatcatccgtgctccggatggagttggtggcgag
cagttcttccagcgtcatgcgatgccggggcaatccaaactgctcgaattgatcaaggta
tttggcgacaagaagccatatctgcagattgatcgcatcgaaggacttgctgcggttgcc
cagatcgcggctgtcgagctccacccgtggaactgtgaacccgggcagccggaagtgcct
ggccgcctggtattcgatcttgatcccggtcccgacgtcccattttccacggtcgttgcc
gctgcccgcgaaatgcgcgatcggctggaagacctcggattgaccagcttctgcaagacg
acgggcggcaagggcttgcatgtcgtaaccccgcttgctgtcaacaaacgaaaaccgttg
tcatggcccgaagcaaaggccttcgcgcacgacgtctgccagcagatggcccgaaacaac
cccgatctctatctgatcaaaatgaccaagagcctgcggggcggtcgcattttccttgat
tacctgcgcaacgatcgcatggcgacggcggtcgctccgctctccccccgagcccgcccg
ggcgccacggtgtctatgcctctgacgtggacgcaggtgaaatcggatcttgacccgaaa
aggttcacgatccgaaccgtgcctgccctgctatcgaagtcgtccgcctggaaggattat
tgtgagggacagcgtcccttggagcaggcgatcaagaagctcggccgaaccggcaaacat
gccgcctga
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