Rhizobium lentis: J0663_27745
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Entry
J0663_27745 CDS
T07189
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rln
Rhizobium lentis
Pathway
rln03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J0663_27745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rln03400
]
J0663_27745 (ligD)
Enzymes [BR:
rln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J0663_27745 (ligD)
DNA repair and recombination proteins [BR:
rln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J0663_27745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QSW96785
LinkDB
All DBs
Position
p2:complement(300966..302027)
Genome browser
AA seq
353 aa
AA seq
DB search
MTKPRRPSAPLLRDSGSSIQSRPVRRRDPDQPNLPFDAMPSRVEPCLALLKQTVPQGPDW
LYEVKWDGYRLALHIEPKGIRILTRGGHDWTHRFPNIAAGAKELGVTRCILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRISTESVFYAFDLLYLDGHDLTRTELSVRRHLLEDLIPETD
AGAIRFSQDLDLGGEELLEHACDRGLEGIIAKHRDSPYRSGRLGDWQKIKCVQSESFMIV
GYEESASNRGGLGSLLLAGRNGHDWIYVGSVGTGFNRTEAEYLRKTLNRLQTKKPVVPLK
GKRLVFSQPTLIAEVEFRGWTHEGSLRHPSYKGLREIQDNAAVFDMTDAPAIP
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaccacggcgcccttccgcccccctccttcgcgactccggttcttccatacaa
tcgcgacctgtccgtcgccgtgatcccgaccagccgaacctgccgttcgatgcaatgccg
tccagagtggagccatgcctggccttgctgaagcagacggtgccgcaagggccggactgg
ctctatgaggtgaagtgggacggctaccgattggcgctccacatcgagccgaaaggtatt
cgcattctcacccgtggcggccatgactggacccaccgttttccaaatatcgccgcaggg
gcaaaggagctcggtgtaacacgctgcattctcgacggagaagctgtcgtccttgatgaa
gagggtcgctcggactttggagcgttgcagcgctcgctcggcggaaggggcggcaaacgg
atttcgaccgaatccgtcttctacgccttcgatctattgtatctcgacggtcacgacctg
acgcgcaccgagctgtcggtccgccgccaccttctcgaagatctgattcctgagaccgac
gctggcgccattcggttctcgcaagacctggatttgggtggcgaggaactgctcgagcac
gcatgcgatcgcggcctggaaggcatcatcgcaaagcacagggacagcccttaccgcagt
ggtcgtctgggggactggcagaagatcaagtgcgttcagagcgaaagtttcatgatcgtc
gggtacgaggaatccgccagcaaccgcggcggactcggcagtcttttgcttgcgggtcga
aacggtcacgactggatctatgtcggctctgtcggcacaggcttcaatcgaacggaggcg
gaatatctgcgcaagacattgaaccgcctccagacgaaaaaacctgttgtgccgctcaaa
ggaaagcgcctcgtcttttcgcagccaaccctgatcgccgaagtcgaatttcgcggctgg
acgcatgagggcagcctgcgacacccctcctacaagggcctccgcgaaatccaggataac
gcagccgtctttgatatgactgatgcccctgcgattccgtga
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