Rhodocaloribacter litoris: GQ464_009545
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Entry
GQ464_009545 CDS
T09819
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rlo
Rhodocaloribacter litoris
Pathway
rlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GQ464_009545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlo03400
]
GQ464_009545 (mfd)
Enzymes [BR:
rlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GQ464_009545 (mfd)
DNA repair and recombination proteins [BR:
rlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GQ464_009545 (mfd)
BRITE hierarchy
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QXD13721
LinkDB
All DBs
Position
2291100..2294477
Genome browser
AA seq
1125 aa
AA seq
DB search
MYLPPVTVSLRFLADRITPAPLFDTVRAWRRTAGKTTLQVRGLSGSLPAFLIHHLRHEGP
LLCLLDTPDAAAYLHSDLQQIHGDTEDLLLFPPTGHKPYDEEQITDLTPLIQRAEVLQRL
LDGFTGTIVTSVPALAELIPPPDLLRDETITLAVGQTLDLAGLLDRLAEQGFERVEFVEQ
PGEVALRGGILDVFPFAGDYPVRIEFFGDEIDSIREFDVRTQRSISRLTATRLVPNLETR
PRTDRPFTALLDALPPATVLVTFDEAPLREHADTLFAEARRAHAAATERAPSPPPPPETR
YLSGDRLERTLLSFPRLMLGSFTGTPADEVLAFEAHPQPAFNSNMGLLRERLAENAARGM
ETIILCDSRGQEGRLRELLEDVLETGRVTLRVESLHEGFEIPALGLAVYTDHQIFNRYHR
PTARRQKKRFGGLSLRELQNLQPGDFVVHVDYGIGKFAGMERITVRGRQQESVRLLYEGG
DVLYVNVNALYKLNKYTGKEGHQPRLTKLGSGQWERTKARTKKRLKDIARDLIRLYAQRK
AAPGHAFPPDTVWQRELEASFQYEDTPDQAAATEAVKTDMEAPTPMDRLVCGDVGFGKTE
IAVRAAFKAVQDGRQVAILVPTTILAAQHYETFKTRLAPFPVHIDVLSRFRSPAEQKATL
ERLARGQVDIIIGTHRLISKDVRFKDLGLLIIDEEQRFGVAVKEKLRQLRVNVDTLTLTA
TPIPRTLQFSLMGARDLSIIATPPPNRQPIVTEIHTFDKDLIRDAILYETSRGGQVFFIH
NRVQSIDEIAAMLRAIVPNVRIRVAHGQMKGSALERVMMDFVDRKFDVLVSTNIIENGLD
ISNANTILINHADRFGLAELHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAVEEF
SDLGSGFSLAMRDLDIRGAGNLLGAEQSGFIADVGFETYHKILDEAVQELQSEEFADVFE
RRPAPRPVETTLDVEADALIPETYLANSVERLNLYRRISEAPDADALAEIRAEMADRFGP
VPPEVDNLLLAAEIKRLAEQLRLPRLLFKNERLFLYLPAQDEDPYFYEHLFYPLLEQLSR
LDHRYVLKDERGKKLRAIIQQVPDLPAARDLVERLTRTVGAPVNP
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgccccctgtcaccgtgtcgcttcgcttcctcgccgaccgcatcacccctgcg
cccctgttcgataccgtcagagcctggcgccgcaccgccgggaagacgacgctccaggtc
cgcggcctctccggctcgctgcccgccttcctcatccatcacctccgccacgaaggcccg
ctcctctgcctcctcgacacgccggatgcagccgcctacctgcacagcgacctccagcag
atccacggagataccgaagacctcctgctcttccccccgaccggccacaaaccctacgac
gaggaacagatcaccgacctgacgcccctgatccagcgagccgaggtgctgcaacgcctc
ctggacggcttcaccggcacgatcgtcaccagcgtacccgccctggccgaattgatcccg
ccgcccgacctcctccgagacgagacgatcacgctggcggtggggcaaaccctcgacctc
gccggtctcctggaccgcctcgccgaacagggcttcgaacgggtcgagttcgtcgagcaa
ccgggagaggtcgccctccgcggcggaatcctcgacgtcttcccctttgccggcgattac
ccggtgcggatcgagttcttcggcgacgagatcgactcgatccgcgagttcgacgtgcgc
acgcaacgctccatcagccggctgaccgccacccgcctcgtccccaacctggagacccgc
ccccggacggaccgccccttcaccgccctcctggacgccctgccccccgccaccgtcctg
gtcaccttcgacgaagctccgctgcgggaacacgccgacaccctcttcgccgaggcccgg
cgggcgcacgccgccgccacggagcgcgccccttcgccgcccccgcccccggagacccgc
tacctgagcggcgaccgcctggaacggaccctcctttccttcccccggctgatgctgggc
tccttcaccggcacacccgccgacgaggtgctcgccttcgaagcccacccccagcccgcc
ttcaacagcaacatgggcctcctccgggaacggctggccgagaatgccgcccgcggcatg
gagaccatcatcctgtgtgacagccggggacaggaaggacggctccgcgagctgctcgaa
gacgtcctcgaaaccggacgggtcaccctccgggtcgagtcgctccacgaaggcttcgag
atccccgccctcggcctggccgtctacacggatcatcagatcttcaaccgctaccatcgc
ccgacggcccgccgccagaagaaacgcttcggcgggttgagcctccgcgagttgcagaac
ctgcagcccggcgacttcgtggttcacgtggactatggcatcggcaaattcgccgggatg
gagcgcatcaccgtgcgcggccggcaacaggaatccgtccgtctcctctacgagggcggc
gacgtgctctacgtcaacgtcaacgcgctctacaagctgaacaagtacaccgggaaggag
ggacaccagccacgcctgaccaagctcggctccggccagtgggaacggacgaaagcccgc
accaagaagcgcctcaaggacatcgcgcgggatctcatccggctgtacgcgcagcgcaag
gccgcccccggccatgccttcccgccggataccgtctggcaacgcgaactggaagcctcg
ttccagtacgaggacacgccggaccaggccgccgccaccgaagccgtcaagaccgacatg
gaggcccccacccccatggaccgcctcgtctgcggcgacgtgggcttcggcaaaaccgag
atcgccgtccgcgccgccttcaaggccgtccaggacggccggcaggtcgccatcctggtg
ccgaccaccatcctggccgcccagcactacgaaacgttcaaaacacgcctggcccccttc
cccgtccacatcgacgtgctctcgcgcttccgctcgccggccgagcagaaagccaccctg
gaacggctcgcccggggacaggtggacatcatcatcggcacccaccggctcatctcgaag
gacgtccgcttcaaagacctgggcctgctcattatcgacgaggagcaacgcttcggcgtg
gctgtcaaggaaaaactccgccagcttcgcgtcaacgtcgatacgctcacgctgacggcc
acccccatcccccggacacttcagttctcgctcatgggcgcgcgggacctctcgatcatc
gccaccccgccccccaaccgccagcccatcgtcaccgaaatccacaccttcgacaaagac
ctcatccgcgacgccatcctctacgaaacgagccggggcgggcaggtcttcttcatccac
aaccgggtgcagtccatcgacgagatcgccgccatgctccgcgccatcgtgccgaacgtg
cgcatccgggtagcccacgggcagatgaaaggcagcgccctcgaacgggtgatgatggac
ttcgtggaccgcaagttcgacgtgctcgtgagcaccaacatcatcgagaacgggctggat
atctcgaacgccaacacgatcctcatcaaccacgccgaccgcttcgggctggccgagctg
caccagctgcgcgggcgcgtgggccgctcggaccggaaggcgttctgctacctgctcgta
ccctccatccacggcctcacacgcgaggcccggcagcggctgcaggccgtcgaagagttc
agcgaccttggcagcggcttcagcctcgccatgcgcgacctcgacatccgcggcgcgggc
aacctcctgggcgccgaacagagcggcttcatcgccgacgtcggcttcgaaacgtatcac
aagatcctcgacgaggccgtgcaggagctgcagagcgaggagttcgccgacgtcttcgaa
cggcgcccggccccccggcccgtcgagacgaccctcgacgtggaagccgacgccctcatc
ccggaaacctacctcgccaacagcgtcgagcgcctgaacctctaccgccgcatcagcgag
gccccggacgccgacgccctcgccgagatccgggccgagatggccgaccgtttcggcccg
gtgccccccgaggtggacaacctgctgctggccgccgagatcaagcgcctggccgaacag
ctgcgcctcccccgcctgctgttcaagaacgagcggctcttcctctacctgccggcccag
gacgaggacccctacttctacgagcatctcttctacccgctgctcgaacagctcagccgg
ctcgaccaccggtacgtgctcaaggacgaacgcggcaaaaagctccgggccattatccag
caggtgccggatctgccggcggcacgggacctggtggagcggctcacccgcaccgtcggc
gcccccgtgaacccctga
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