Ruminococcus lactaris: NQ541_00515
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Entry
NQ541_00515 CDS
T08757
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
rlr
Ruminococcus lactaris
Brite
KEGG Orthology (KO) [BR:
rlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlr03019
]
NQ541_00515
Messenger RNA biogenesis [BR:
rlr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ541_00515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Cas3_HD
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
UWP65661
LinkDB
All DBs
Position
99357..100301
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AA seq
314 aa
AA seq
DB search
MRYISGLCEGETIRNVYLCKGKRSAETRNGKPYDNLILQDKTGTLDGKVWDPNSQGIADY
DEKDFIEVFGDIINYNGNLQMNIRQIRVAQEGEYNPADYMPTTEKSVDSMYEELVAYIRQ
ISNPYLRAALEFYFVKDEAFIAKFKGHSAAKTVHHGFAGGLLEHTLGVVHLCEYFASNYS
ILNRDLLLTSAIFHDIGKVKELSAFPDNDYTDEGQLIGHIVIGVEMIDDAIRSIPDFPEK
IGNELKHCIVAHHGELEYGSPKKPALAEAMALNLADSADAKLQTLTELFKNKKGTDWLGF
NRLFESNIRKTSDI
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgagatatattagtggattatgtgaaggcgagacaatcaggaatgtatacctttgtaag
ggaaagcgttctgcggagacaagaaatggaaagccttatgacaatctgatccttcaggat
aagactggaacgttagacggaaaggtatgggatcctaattcacagggaattgcggattat
gatgagaaagattttatcgaagtatttggagatatcattaattataacgggaatcttcag
atgaacatccgtcagatccgggtggctcaggaaggagaatataatccggctgattatatg
ccgacaacagagaaaagtgtggacagtatgtacgaggaactggtggcatatatccgtcag
atttccaatccatatctgagagcggcactggaattttacttcgtgaaagatgaagcattt
attgcaaaattcaaaggtcattctgctgcgaagacggttcatcacggatttgccggaggt
ctgcttgagcatacacttggcgtggttcatttatgtgaatattttgcttcaaattacagc
atcctgaaccgggatcttctgctgacttcagcaattttccatgacattggaaaagtaaaa
gagctgtctgcatttccggataatgattatacagatgaaggacagttgatcggtcatatt
gtgatcggtgtggaaatgatcgatgatgcgatccgctcgattcctgatttcccagaaaag
ataggaaatgaactgaagcactgtatcgtggcacatcatggcgagctggaatatggttca
ccaaagaaaccggcactggcagaggcaatggctctgaacctggcagacagtgcagatgcg
aagcttcagacactgactgagctttttaagaataaaaagggaacagactggctgggattc
aaccgtttatttgagtcaaatataaggaaaacctcagatatttaa
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