Rhizobium lusitanum: HB780_00180
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Entry
HB780_00180 CDS
T07787
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rls
Rhizobium lusitanum
Pathway
rls03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HB780_00180 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rls03400
]
HB780_00180 (ligD)
Enzymes [BR:
rls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HB780_00180 (ligD)
DNA repair and recombination proteins [BR:
rls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HB780_00180 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QND44286
LinkDB
All DBs
Position
p_2:complement(28674..31322)
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AA seq
882 aa
AA seq
DB search
MAGNLSNYRAKRDFKKTGEPSGEAEVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKRTPEE
ALAKGDFKFTLEGQRLRGSFVLVRMRHDRDGGKRTNWLLIKHRDDFSVEENGASVLDEND
TSVASGRTMAAIASGKGKKPKPFMLQNGDVEADAVWNSNEGVAAEKRKAGGENKKKPAAV
KQPKSATPDFIPPQLCETLARPPNADGWIHEIKFDGYRIQMRVENGEVILKTRKGLDWTA
KFLAIAKSASALPDVIIDGEVCALDESGAPDFAALQAALSEGKTDDLVYFAFDLLFVGEE
DLRELPLKERKDRLTTLLSDAGEDPHLRFVEHFETGGDAVLRSACRLSLEGIVSKQSDAP
YQSGRTETWAKSKCRAGHEVVIGAYAKANGKFRSLLVGVNRGDHFVYVGRVGTGYGAKTV
ETLLPKLQDMETSKSPFTGIGAPKKSSEIVWLKPELVAEIEFAGWTADGQVRQAAFKGLR
EDKPAAEVEADKPASPSKDDVPDPETDQPGTKRFRKGGKAEVMGVMITSPDKPLWPDAGD
GEPVTKVDLARYHEAVGSWLIEHIKGRPCSIIRTPDGIAGEQFFQRHAMPGTSSLLELVT
VFGDKKPYLQIDRIEGLAAIVQIGGVELHPWNCEPGQPEVPGRLVFDLDPGPYVEFSTVI
EAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLDWDIAKGFAHDVCEQMARD
NPDLYLIKMAKSQRQGRIFLDYLRNARMATAVAPLSPRARPGATVSMPLTWTQVKAGLDP
KRFTVRTVPALLAKSSAWQDYCDSQRSLEQAIKRLGKSKRAV
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaatctttcgaactatcgtgccaaacgcgatttcaagaaaacgggcgaaccg
agcggcgaggctgaggtcaagccatcgaaccgccggcggtttgtcattcagaagcatgac
gccacccgcctgcactatgacctcaggcttgagctcgacggcgtcttcaagtcctgggcg
gtgaccaaggggccttctctcgatccgcacgacaagcggctggcggtggaggtggaagat
cacccgctggactacggggatttcgaaggtacgatcccgaaaggccaatacggcggcggc
acggtgatgttgtgggatcgcggctattgggagccggaaggcaagaggacgccggaagag
gctctcgccaagggcgatttcaaattcacgctggagggccagcggctacgcggcagcttc
gtgctcgtgcgtatgcgtcacgaccgggatggcggtaagcgaaccaattggctgctgatc
aagcatcgcgacgacttttcggtcgaggagaacggagcgtccgtcctcgacgaaaacgat
acgtcggtggcgtccggcaggacgatggcggcgatcgcctccggaaaaggcaagaagccg
aagccattcatgctgcagaatggcgacgttgaggcagatgcggtgtggaacagcaatgag
ggtgtcgccgccgagaaacgcaaagcgggaggggagaacaagaaaaagcccgcggccgtc
aagcagccgaaatccgctacgccggatttcattccgccgcagctctgcgaaactttagcg
cgcccgcccaatgccgacggttggatccacgagatcaagtttgacggttatcgtattcag
atgcgggtcgagaatggcgaagtcatactgaaaactcgcaagggtctggattggacagcc
aaattcctggcgatcgccaagtcagcctccgctcttcccgatgtcatcatcgatggtgag
gtttgcgccctcgacgaaagcggggccccggattttgcggcgctgcaggcggcgctgtca
gaaggaaagacagacgatctggtgtactttgccttcgacctcctgttcgtcggcgaggag
gatctacgcgaactcccgcttaaagaacgaaaggacaggctgacgacacttttgtcggat
gcgggcgaagatccgcatctacgcttcgtcgagcattttgaaaccggtggtgacgctgtt
ctcaggtctgcctgtcgtttatcgttggaagggattgtctccaagcaaagcgacgcgccc
tatcaatccggccgcacggagacctgggcgaaatcgaaatgcagggcagggcatgaggtc
gtcattggcgcctatgcaaaagccaacggaaagttccgatccttgctcgtgggcgtcaat
cgcggcgatcactttgtctatgtcgggcgcgtcggcacgggctacggcgccaagaccgtc
gagacgctgctcccaaagcttcaggacatggagacgtccaagtccccgttcacgggaata
ggggcgccgaagaagagctctgagatcgtctggctcaagcccgagctcgtcgccgagatc
gagtttgccggctggacggccgatggccaggttcgccaagccgcattcaaaggtttgcgg
gaagacaagcccgccgccgaggtcgaggcagacaagccggcgtcaccgtcgaaagacgat
gtgccggatccagagacggatcaaccggggacaaagcgtttccgcaagggcggaaaggcg
gaggtgatgggcgtgatgatcaccagtcccgacaagccgctgtggccggatgccggcgat
ggggagccggtgaccaaggttgatctggcgcgctatcacgaggccgtaggttcctggttg
attgaacacatcaagggacgcccttgttcgatcatacgaactcccgatggaatcgcggga
gaacagttcttccagcgccatgccatgccggggacatcgagcctcctggaactggtcacg
gtcttcggcgacaagaagccctatctgcagattgaccgcatcgaaggtctggccgccatc
gtccagatcggtggcgtcgagctgcatccatggaactgtgagcctggtcagccggaagtg
ccgggccgtctggtgttcgacctcgatcctggaccctatgtcgaattctcgacggttatc
gaggccgcccgtgagatccgagaccggctggaagagctgggcctggtgagcttctgcaag
acgacgggaggcaaggggctgcatgtggtgacgcctcttgccgtgccgaagggcaaaaaa
ctcgactgggatatcgcgaagggctttgcccacgatgtctgcgagcaaatggcccgcgac
aatccggacctctatctgatcaagatggccaagagccagcgtcagggccgaatcttcctc
gactatttgcgcaacgctcgtatggcgacggcggtcgctccgttgtctccgcgggcgcgg
cccggcgccaccgtgtcgatgccgttgacatggacgcaagtcaaagccggtctcgatccg
aagagatttacggttcgcaccgtccctgcgcttcttgcgaaaagctcggcatggcaggat
tactgcgatagccagcggtcgcttgaacaggccatcaaacgtctcggaaagtcaaagcgg
gctgtttga
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