Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_2396
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Entry
Rleg2_2396 CDS
T00779
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlt
Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg2_2396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlt03400
]
Rleg2_2396
Enzymes [BR:
rlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg2_2396
DNA repair and recombination proteins [BR:
rlt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg2_2396
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACI55671
UniProt:
B5ZUW2
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Position
complement(2455496..2456545)
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AA seq
349 aa
AA seq
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MTKPPRKPSQPLLGNVDAPIRSRPRRRRDPAQPNLPLDPMPARIEPCLALLKPKPPKGAQ
WSFEVKWDGYRIAVHIAPSGVHILTRGGHDWTHRFPAIAAEAAQLGAATAILDGEAVVLD
DQGRSDFGKLQQSLGGRGGKLNSGASVLMAFDLLYFDGHDLTKTELSTRRHLLEGLIAPG
RESSIRLSEDVDADGEQLLRVACEHGLEGIIAKDRNSPYRSGRGGDWLKIKCIQSDGFAI
IGYENSTAAFGGIGRLLLAARKGDELVYVGGVGTGFNERSAAELREQMDKLIIPQPAVNT
GRKRNAVFIEPKLVAEIEYRGSTNDGKLRHASYKGLREKQDNAAVYEIA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagccgcctcgtaaaccctcacagccgctgctcggtaacgttgacgcacccatc
cgcagccggccgcgccggcggcgcgatccagcccagccgaaccttcccctcgatccaatg
cctgcccgcatcgagccttgtctagcgctcctcaagccgaagccgccgaaaggcgcgcaa
tggtcgtttgaggtgaaatgggatggctatcgcattgccgttcacatcgcaccatctggc
gttcacatcctgacacgtggcggtcatgactggacgcaccgcttcccggcgatcgcggcc
gaagcagcgcagctcggcgcggcgacggcaatcctcgatggcgaagctgtggtgctggat
gaccagggccgctcggatttcggcaagctgcagcagtcgctcggcggccggggcgggaag
ctgaattccggcgcatcggtcctaatggctttcgatcttctatatttcgacggccacgat
ctgacgaagacggagctttcgacgcgacggcacttgctcgaggggctgatcgcaccaggc
cgggaaagttcgatacggctctcggaagacgtcgacgccgatggcgagcagctgctgcgt
gtcgcttgcgagcacgggctcgaaggtatcatcgcgaaagaccgcaacagcccgtatcgc
agcggccgcggcggcgattggctcaagatcaaatgcatccagagcgatggcttcgcgatc
atcggctacgagaattcgacggcagctttcggcggcatcggccggctgctgcttgccgcg
cgcaaaggagatgagctcgtctatgttggtggagtggggacggggttcaacgagcgttcc
gcggccgagctccgagagcagatggacaagctgatcataccccagccggccgtcaacacc
ggacgcaagcgcaacgcggtctttatcgaaccgaagcttgtcgccgagatcgaatatcga
ggatcgaccaacgacgggaagctcaggcacgcctcatataaggggctgagggagaagcag
gacaacgcggcggtttatgagattgcttaa
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