Rhizobium leguminosarum bv. trifolii CB782: RLEG12_02295
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Entry
RLEG12_02295 CDS
T03015
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG12_02295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlu03400
]
RLEG12_02295
Enzymes [BR:
rlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG12_02295
DNA repair and recombination proteins [BR:
rlu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG12_02295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHG49730
LinkDB
All DBs
Position
unnamed2:211280..213928
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AA seq
882 aa
AA seq
DB search
MASDNLSTYRSKRDFQKTAEPSGDKQIARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVDENGEAILEDN
DTSVASGRTMEAIAAGKGRKPKPFMMKGGDIKADAVWDSNHGLAAEERKETGRAGRKPKA
ARVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRTLEGEVTLKTRKGLDWTGKY
PEIAEAASALPDAIIDGEICALDDHGAPDFAALQAAISEGRTGDLVYFAFDLLYEGGEDL
RSLPVVERKARLQSLLADAGDDPRLRFVEHFETGGDAVLRSACKLSLEGIVSKQVDAPYQ
SGRADSWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVET
LLPKLQALEAAKSPFTGIGAPKKEAEVTWLKPKLVAEIEFAGWTADGIVRQAAFKGLRED
KPAREVKAERPAKPAETEVPEPAAEAEVKARPARRKGAKTEVMGVMISNPDKPLWPDAND
RRPVTKEELARYYEAVGGWMIAHIEGRPCSIIRAPDGLGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCQPHKPEVPGRLVFDLDPGPDVPFSTVV
SAAREMRDRLDALGLISFCKTTGGKGLHVVTPLAINKRKPLSWAEAKSFAHDVCQQMARD
NPDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDP
KRFTIRTVPALLSKSPAWEDYCDGERPLEQAIKRLGKASAAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaacctgtcgacatatcgctcgaagcgcgattttcaaaagacggcggag
ccgagcggcgacaagcagatcgcgcgcagcaatcgccgtcgcttcgtcatccagaaacac
gacgccacccggctgcattacgacctgcggctcgaactcgacggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtcgctcgatccgcatgacaagcggctggccgtcgaggtggaa
gatcacccgctcgattatggcgacttcgaaggcacgatcccgaaaggccagtatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcccgagggaaagaagagcccggag
caggcgcttgccaagggcgacttcaagttcacgctggaaggcgaacggctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcgacggcggcaaacggaccaactggctgctg
atcaaacatcacgacgcgttctcggtcgacgaaaatggcgaagcgatcctggaggacaac
gatacctcggttgcctccggccggacgatggaggcgattgccgccggcaagggccgcaag
ccgaagccgttcatgatgaaaggcggcgatatcaaggccgatgccgtctgggacagcaac
cacgggctggccgccgaagagaggaaagagacgggccgagccggcaggaagccgaaagcg
gcaagggtcgacctcccggatttcatcgcgccgcagctttgccagaccctggagcggccg
ccggccggcgagggctggattcacgagatcaaattcgatggctaccggatccagatgcgg
acgctcgagggcgaggtgacgctgaagacgcggaaggggctcgactggaccggtaaatat
ccggagatcgccgaggcggcatcggcactacccgacgccattatcgacggcgagatctgt
gctctcgacgaccatggcgcaccggatttcgcagccctgcaggccgccatttcggaaggc
aggaccggcgatctcgtctatttcgccttcgatcttctttacgagggtggcgaggacttg
cggtcgttgccggtcgtggagcgcaaggcccggcttcaaagcttgctggcggatgccggt
gatgaccctcggctccgtttcgtcgagcatttcgagaccggcggcgatgcggtccttcgc
tccgcctgcaagctctcactggaaggcatcgtctccaaacaggtcgatgctccctatcaa
tccggccgcgccgacagctgggccaagtcgaaatgccgcgccggccacgaagtggtgatc
ggcgcctatgccaagaccaacggcaaattccgctccctgctggtcggcgtctaccgcggc
gaccacttcgtctatgtcggccgcgtcggcaccggatatggcgcgaagaaagtggaaacg
ctgctgccgaaactgcaggcgctcgaggcggcaaaatcgcccttcaccggcatcggtgcg
ccgaagaaggaggccgaggtcacctggctgaagcccaagctggtggcggaaatcgagttc
gcaggctggaccgccgacggcatcgtccgccaggcggccttcaagggcctgcgggaggac
aagccggccagagaggtcaaggccgaacggccggccaagcccgctgagaccgaggtaccg
gagccggcggcggaggcggaggtgaaggcgaggcccgctcgccgtaaaggcgccaaaacc
gaggtgatgggggtgatgatctccaatccggacaagccgctgtggccggatgccaatgac
cgcaggccggtgaccaaggaagagctggcgcgctattatgaagccgtcggcggctggatg
atcgcgcatatcgaagggcgtccctgttcgatcatccgtgcgcccgatgggctcggcggc
gagcagttcttccagcgccatgccatgcccggcacctcgaacctcctcgaactggtcaag
gtcttcggcgacaaaaagccctacctgcagatcgacagggtcgagggtctggctgctgtc
gcgcagatcggcgctgtcgaattgcacccctggaattgccagccgcacaagccggaggtg
ccgggccggctggtgttcgacctcgaccccggccccgacgtgccgttctcgacggtcgtt
tccgccgcccgcgaaatgcgcgatcgtctcgacgcactgggcctgatcagcttctgcaag
acaaccggcggcaagggcctgcacgttgtcacgccgcttgcgatcaacaaacgcaagccg
ctttcctgggctgaggcgaagagcttcgcgcacgacgtctgccagcagatggcgcgcgac
aatcccgatctttatctgatcaagatgaccaagagcctgaggaacggccgcatcttcctc
gactatctccgcaacgaccggatggctacggccgtggcacccttgtccccacgggcccgg
ccaggcgccacggtctcgatgccgctgacctggacccaggtcaaatcggatctcgacccg
aaacgcttcaccatccgcaccgtgccggcactgctgtcgaaatcgccagcctgggaggat
tactgcgatggcgagcgtccgctggagcaagcgatcaaacgcctcggcaaagcatccgcg
gcggcttga
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