Rhizobium laguerreae: RlegWSM1455_24555
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Entry
RlegWSM1455_24555 CDS
T08814
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlw
Rhizobium laguerreae
Pathway
rlw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RlegWSM1455_24555 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlw03400
]
RlegWSM1455_24555 (ligD)
Enzymes [BR:
rlw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RlegWSM1455_24555 (ligD)
DNA repair and recombination proteins [BR:
rlw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RlegWSM1455_24555 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UFW67504
LinkDB
All DBs
Position
pWSM1455_1:120492..121535
Genome browser
AA seq
347 aa
AA seq
DB search
MTRPRRPILPLLDESHSTLHSRPIRKRDPDQPSLPFDPMPSRIEPCLALLKPTVPVGPDW
LYEVKLDGYRLAIHIEPKGVRVITRGGHDWTHRFPAIAAAAKELGVTTAILDGEAVVLDD
HGRSDFGALQRSLGGRGGKRVSTESILVAFDLLYLDGHDLTGTELDVRRHLLEDLIPEGD
DQTIRISEEIELPAEDLLEHACHRHLEGIIAKHRDRPYRSGRTGDWLKIKCVQSESFMIV
GYEQSASARGGIGRLLLAGRQGLDWIYVGSVGTGFGARDAEYLKKTLDRLKTSRPAVPLK
GKRLVLVQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVFDMS
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcccgcgccgcccaattctgcccttgctcgacgaatctcactcaacgctgcac
tctcgtccgatccgcaagcgcgatcctgaccagcccagtctgcccttcgatccaatgccg
tcgcgcattgagccgtgcctcgcactgctgaagccgactgtgcccgtggggccggattgg
ctctatgaggtgaaattggatggctatcgattggcaatccatattgaaccgaagggcgtg
cgagtcattactcgcggcggccatgactggacccatcgcttccccgccatcgctgcggca
gcaaaagagcttggggtgacgaccgccattctcgatggcgaggccgttgtactcgatgat
cacggccgatcggattttggcgccctgcaacgttctctcggcgggcggggcggcaagcgg
gtgtcgaccgagtcaatcctcgttgccttcgaccttctctatctcgatggacacgatctg
accggcaccgagcttgacgtacgccggcacctgcttgaagacctgataccggaaggcgat
gatcagacgatccgcatctccgaagagatagagctgccggccgaagacctcctcgagcac
gcctgccatcgtcatctggaaggcatcattgccaagcaccgcgaccggccctaccgcagc
ggtcgcacgggcgattggctgaaaatcaaatgcgtccagagcgagagcttcatgatcgtc
ggttatgagcagtcggcatccgcccgcggcggcatcggcaggctgctgctggccggcaga
caagggctcgactggatttacgttgggtcggtcggaaccggtttcggtgccagagatgct
gaatacctgaaaaagacgttggaccggttgaagacgagccggcctgccgttcccctgaag
ggcaagcgtcttgtcctcgtgcagccgacgctgatcgccgagatcgagtttcgcggctgg
acggatgacggcaatctccgccatgcctcctacaaggggctgcgcgaggttcaggacaac
gccgccgtcttcgatatgagctaa
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