Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_1021
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Entry
Rmag_1021 CDS
T00438
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmag_1021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_1021
Enzymes [BR:
rma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmag_1021
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rmag_1021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
RecG_dom3_C
UB2H
Malt_amylase_C
Motif
Other DBs
NCBI-ProteinID:
ABL02726
UniProt:
A1AXR9
LinkDB
All DBs
Position
1098290..1101718
Genome browser
AA seq
1142 aa
AA seq
DB search
MQYLYPDKLKCFQSNQKTYWGSLYGSADALALIEFTNQQQQVILVITDDTGHFDNLYKSL
NFYNTNLEILKFDSWEVLAYDHFSPHPDITSSRLKTLSKLKNLKNGIIITTLESLFSYLC
PLEFSEKYSFNININDNINIKAFSKKLLKIGYNRVTTVMEHGEFNIHGSLIDLYPMGAKT
PYRIDLFDQEVESIRTFDTSTQRSKMEVSKIMLLPAREFATDSTSIERFKVNYQKAFNDD
GFIYTEVSEGRLPSGIEFYLPLFFNTTNTLFDYLVDNAIIVTSKGFSSLVDKTYSEIHER
FENAKKSLDRAPLDIHKVFLSKELLFREIKQKSQHIISTSKLENKNQNFNFNSSLLPSIR
IEPQTKNPLRKFLAFVKKFTNKKILVVCESRSRQNVLRDLFTSHQLDTHNVKNWYEFSKS
SKLLNITNENLTNGLLTDDIAIITEENLFGQEVVQQQRRRVKHKDFDEAIKSLVEIKMGD
AIVHENYGVGRYLGLKPQIFDDQSQDFLTLEYADNAKLMVPITSLNLISRYAGISSENAP
LHKLGTNQWSKAKKKAGEALFDVAAELLEIYAKRASKISFAFPKPNDAYSSFVASFPFEE
TPDQLKTMDEVLADMQSCRPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAILVPTTLL
SNQHYQSFVDRFINHPVEIAALSRFQTQKEKKLIIKKLNQGTIDIIIGTHTIIQSTIKYK
DLGLIIIDEEHRFGVKQKEALKKIRGESDILTMTATPIPRTLNMALGSLRELSIIATPPA
KRSAIQTFVQEWNNNNIKEAITREMHRGGQVFVLHNDIDSIDKMVENLKQIMPKIHVRIA
HGQMPTRELKKIMSDFYHARFQILVCTTIIETGIDIPNANTIIINNAQNFGLAQLHQLRG
RVGRSHHRAYAYLIIKSYQLLSKTAKKRLDVIESLEELGAGFILANHDLEIRGAGDLLGD
NQSGKINEIGFNLYHDLLKRTIDTLRSGRKINFDDPISHEVKIDSGLPSIIPETYIFDVH
QRLVLYKRIASCQNNKELKALQIEMIDRFGLLPDSTKNLFANTKLKLFSQKIGIDKISLY
ENKAIITFGNKNTIEPIKIINLIQKQTKKYQLKDQNQLIIKEEMPEDIRRIELIENLLKT
LS
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatctctatcctgataagctcaaatgctttcaatcgaatcaaaaaacctattgg
ggctcactgtacggtagtgcagatgcactagcattaattgaatttacaaatcaacaacag
caagttattttagtcattactgatgacactggacattttgacaatctttataaatcttta
aacttctacaacacaaacttagaaattttaaaatttgatagttgggaagtgctcgcctat
gatcacttttcacctcatcctgatatcacatcaagtcgattaaaaaccttatcaaaactt
aaaaatcttaaaaatggtattattatcactacattagaatcattattttcatacttatgc
ccgttagagtttagcgaaaaatatagctttaatattaatattaatgacaatattaatatt
aaagcttttagtaaaaaactactaaaaattggctacaaccgtgtaaccaccgtaatggaa
catggtgaatttaatattcatggctcattgattgatttatacccaatgggtgcaaaaaca
ccttacagaattgatttgtttgatcaagaagtagagtctattcgcacctttgacacctca
actcaacgctctaaaatggaagtgtctaaaattatgctattgcctgccagggagtttgcc
acagatagtactagtattgaacgctttaaagtcaattatcaaaaagcatttaatgacgat
ggctttatttatactgaagttagtgaaggtaggttaccaagtggtattgaattttattta
ccactcttttttaacacaaccaataccttgtttgattatctagtggataacgccattatt
gtcacatcaaaagggttttcaagtttagtggataagacctatagcgagatacatgaacga
tttgaaaatgctaaaaaatcattagatagggcgccacttgatattcataaagtttttctg
tccaaagaattactatttagagaaatcaaacaaaaatcacagcatatcattagcacatca
aaactagaaaataaaaaccagaattttaattttaactcaagcttattgccctcaatacgt
attgaaccacaaacaaaaaacccattaagaaaatttttagcctttgttaaaaaattcact
aacaaaaaaatattagttgtttgtgaatcgcgtagcaggcaaaatgtgctcagagattta
ttcactagtcatcaacttgatacccataacgttaaaaactggtacgaatttagtaaaagt
agcaaactgcttaacattactaatgaaaatcttaccaatggcttactcactgatgatatt
gccattattactgaagagaatttattcggtcaagaagtggttcaacaacaacgtcgtcgt
gtcaagcacaaagattttgatgaagcaattaaaagcctagttgagattaaaatgggtgat
gctattgtgcatgaaaattatggtgtaggtaggtatttagggcttaaaccccaaatcttt
gatgatcaatcacaagattttcttaccctagaatatgctgataatgcaaaattaatggtg
ccaataacctcactcaacctaatctccagatacgctggaatctcatcggagaatgctcca
ttacacaagctaggaacaaatcaatggagcaaggctaagaaaaaagcaggtgaggctttg
tttgatgtggcagctgaattattagaaatttatgccaaacgagcctctaaaataagcttt
gctttccctaagccgaatgatgcttactcctcatttgttgctagtttcccttttgaggaa
acaccagaccaactaaaaaccatggatgaagttttagcagatatgcaatcatgcaggcca
atggacagattggtctgtggcgatgttggttttggtaaaactgaaattgctatgcgtgcg
gcattcttagcggttgaagcggggaagcaagtggcaattttggttccaaccacgctatta
tctaaccagcattatcaatcatttgttgaccgctttattaaccaccctgttgaaattgca
gcgctttcaaggtttcaaactcaaaaagagaaaaaactaattattaaaaaattaaatcaa
ggaacaattgacattatcattggtactcacacaattattcaaagcactattaaatacaaa
gatcttggcttgattattattgacgaagagcatcgtttcggtgttaaacaaaaagaggca
ttgaaaaaaatacggggagaaagtgacattctgaccatgactgccacccctattccacgc
acattgaatatggcgctaggttcattaagagagctgtccattattgccaccccccctgcc
aaacgtagtgccattcaaacgtttgtacaagagtggaataacaacaacatcaaagaggca
attacacgtgaaatgcaccgtggcggtcaggtatttgtactacataacgatattgattca
attgacaaaatggtagaaaatctcaaacaaattatgccaaaaattcacgttcgtattgcc
cacggacaaatgccaacgcgtgaactaaaaaaaattatgagtgatttttatcacgcacgt
ttccaaattttggtttgcaccacaattattgaaacagggattgacattccaaatgctaat
accatcattatcaataatgcacaaaattttggtctggcacaattacaccagctacgaggt
cgtgttggtcgttcccatcatagggcttatgcctatttaattattaaatcttatcaatta
ttatccaaaacagccaaaaaacgtctagatgtcattgaatctttagaagagcttggtgct
ggatttatactagccaatcacgaccttgaaattcgtggtgcgggtgatttattgggcgat
aatcaatctggaaaaattaacgaaattggctttaatctttatcatgatttattaaaacgt
accattgacaccctgcgttctggcaggaaaattaactttgatgatccaatcagtcatgaa
gtgaaaattgattctggtttgccatctatcattccagagacgtatatttttgatgtacac
caacgacttgtactctataaacgtattgcaagttgtcaaaacaataaagaacttaaagca
ttacaaattgagatgattgatcgttttggattattaccagattcaaccaaaaatttattt
gccaatactaaactcaagctcttttcacaaaaaattggcattgataaaatcagtctctat
gaaaacaaagctatcatcacctttggcaataaaaataccatcgaaccaataaaaataatc
aaccttattcaaaagcaaacgaaaaaatatcagctaaaggatcaaaaccaattaattatt
aaagaagagatgcctgaagatattagacgaatcgagttgatagaaaacctattaaaaaca
ctaagttaa
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