Roseicyclus marinus: MACH21_15860
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Entry
MACH21_15860 CDS
T09703
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmai
Roseicyclus marinus
Pathway
rmai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MACH21_15860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmai03400
]
MACH21_15860 (mfd)
Enzymes [BR:
rmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH21_15860 (mfd)
DNA repair and recombination proteins [BR:
rmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MACH21_15860 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
MFD_D3
AAA_16
AAA_30
RecG_dom3_C
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
BDW85409
UniProt:
A0AA48KIR0
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All DBs
Position
1661113..1664565
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AA seq
1150 aa
AA seq
DB search
MTQAPSHILASGTPEGFDATMVLRELAQGGGAPVLHIARDDKRMAAMARALAFFDPTVPV
LMFPGWDCLPYDRVSPNPEISAARMATLAALAGGLSGAFVVLTTLNAATQYLPPRDLLRA
SAFVATVGGRIDEGALKDFLVRMGFSQTPTVTEPGDYAVRGGIIDVWPPGESGPVRLDLF
GDVLDGARRFDPATQRTTEKLERVELAPVSEVVLDEAAITRFRQNYRIEFGAAGTDDPLY
EAVSAGRKHQGVEHWLPFFHERLETLFDYLPKARITLDDQTTPQRLARWETISDQYDTRK
TALTQKGRLDTVYKPVPPGLLYLDDAAWTKAVAGHRVVQFAPIPAAPGPGIIDAGGRVGR
NFAPERQNESLSLFGALADHVQALRKDSAVIIASWSEGARERLHGLLQDQGLSDAKLVAD
ARALGPKGSLNLVVWPLEEGFTGAGLAVISEQDVLGDRLIRPKRKTKRAENYLTEAQSLS
PGDLVVHVDHGVGRYKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELLSRYGHDEGL
LDKLGGGAWQAKKARLKERIRQIADKLIRIAAERLLRKAPILEPPGDMWEAFCARFPYEE
TDDQLAAISDVLEDLEAGRPMDRLVVGDVGFGKTEVAMRAAFVAAAQGLQVAVIAPTTLL
ARQHAKTFADRFRGFPVNVRQLSRFVSQKEASETKKGMADGTVDIVIGTHALLAKGIRFQ
NLGLMIVDEEQRFGVNHKERLKEMRSDVHVLTLSATPIPRTLQMSLSGVRDLSMIGTPPV
DRLAIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRIEDLPEIEAFLRDQVPEVSFVVA
HGQMAAGELDDRMVAFYDGKYDVLLATTIVESGIDIPTANTMVIHRADMFGLAQLYQIRG
RVGRAKTRAYAYLTTKPRQKLTPAAEKRLRVLGSLDSLGAGFTIASQDLDIRGAGNIVGE
EQSGHVKEVGFELYQSMLEEAITRIRSGEDEGLPGDGGQWSPQINLGVPVLIPETYVPDL
DVRLGLYRRLSQLETKVDLEGFAAELIDRFGTLPKEVNTLLLVVRIKAMCKRAHIARLDA
GPKGATVQFHMDKFPNPKGLVDFVQAEKGEAKVKDNKIVVRRDWSSEAEKIKGAFAIARD
LAVHAAGKAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcgcccagccacatcctcgcctccggcacgcccgaagggttcgacgccacc
atggtcttgcgcgaactggcgcagggcggcggcgcgcccgtgctgcatatcgcccgcgat
gacaagcgcatggcggccatggcgcgcgctttggcctttttcgatccgaccgtcccggtc
ctgatgtttccgggctgggattgcctgccctatgaccgcgtatcccccaaccccgagata
tcggccgcgcggatggcgacgcttgccgcccttgccggcgggttgtcgggggcctttgtc
gtcctgaccacgctcaatgccgcaacccaatacctgcccccgcgcgatcttttgcgcgcc
tcggccttcgtggcgacggtcggtggccgcatcgatgagggcgcgctcaaggatttcctt
gtgcgcatgggcttttcgcagacgccgaccgtcaccgaaccgggcgattacgcggtgcgc
ggcggcatcatcgatgtctggccgccgggcgaaagcggccctgtgcggcttgatctgttc
ggtgatgtcctcgacggcgcgcggcggttcgacccggccacgcaacgcaccaccgaaaag
ctggaacgggtggagcttgcgcccgtgtccgaggtcgttctggacgaggccgcgatcacg
cggttccggcagaattaccgcatcgaattcggcgcggcgggcaccgacgatccgctctac
gaagccgtcagcgcagggcgcaagcatcagggcgtcgaacattggctgcccttctttcac
gaaaggctcgagacgctcttcgactaccttccaaaggcgcggatcacgcttgacgaccag
actacgccgcaacggctggcgcgctgggaaaccatttccgatcaatatgatacgcgcaag
actgccctgacccagaaggggcgtctggatacggtctacaaaccggttccaccgggtctt
ctgtatctcgacgatgcggcatggaccaaggcggtggcgggccatcgcgtcgtgcaattc
gcgccgatcccggccgcaccgggccccggcatcatcgatgcgggcgggcgtgtggggcgc
aatttcgcgcccgagcgtcaaaatgaatccttgagccttttcggggctttggcggatcat
gttcaagctttgcgcaaagacagcgccgtcatcatcgcctcctggtccgaaggggcgcgg
gaacgcctgcacgggcttttgcaagatcagggtttgagcgatgcgaaacttgtcgccgat
gcccgcgcacttggcccgaaaggcagcctgaaccttgtcgtctggccgctggaggaaggg
ttcaccggcgcgggccttgccgtcatctcggaacaggatgttctgggcgaccggcttatc
cgcccgaaaagaaagacgaaacgggccgaaaactacctgaccgaggcgcaatctctgagc
cccggcgatctggtcgtgcatgtcgatcacggggtcgggcgctacaaggggctcgagacc
gtcacggccatgggcgcgccccatgaatgcctgctcttggaatatgcgggcggggatcgc
ctgtatcttcctgttgaaaacattgaacttctcagccgctatggccatgacgaagggctt
ttggacaagctcggcggcggcgcgtggcaggccaagaaggcgcggctcaaggaacggatc
cggcagatcgcggacaagctgatccgcattgccgccgaacgcctgctgcgcaaagccccc
atcctcgagccgcccggcgacatgtgggaggcgttctgcgcgcgcttcccctacgaggaa
accgacgaccagctggcggcgatttccgatgtattggaagaccttgaggccggtcgcccg
atggatcggcttgtcgtgggcgatgtcggtttcggcaagaccgaagtggcgatgcgcgcg
gcatttgtcgcggcggcccaaggcctgcaggtggcggtgatcgcgcccacgacgcttctg
gcgcgccagcatgccaagacttttgccgatagattccgggggtttccggtcaatgtccgg
cagttgagccgctttgtcagccagaaagaggcgagcgagaccaagaagggcatggcggat
ggcacggtcgatatcgtgatcggcacccatgcgctgctcgccaaggggatcaggttccag
aaccttgggttgatgatcgtcgacgaagaacaaaggttcggcgtcaaccacaaggaaaga
ttgaaggaaatgcgctcggacgtgcatgtcctgacgctgtcggccacgcccattccgcgc
acgctgcaaatgtcgctttcgggtgtgcgcgacctgtcgatgatcggcacgccgcctgtc
gaccggcttgcgatccggacctatgtcagcgaattcgacgctgtcaccatccgcgaggcg
ctgctgcgagagcattaccggggcggccaaagcttctacgtcgtgccccggatcgaggat
ctgcctgaaatcgaagcatttttgcgcgatcaggtgcccgaggtcagctttgtcgtggcg
catggccagatggcggcgggcgagctggatgaccggatggtggccttttacgacgggaaa
tacgacgtgctgctggccacgaccatcgtggaaagcggcatcgacattccgaccgccaat
accatggtcatccaccgcgcggacatgttcgggctggcgcagctctaccagatccggggg
cgcgtgggccgtgcaaaaacaagggcttacgcctatctgacgaccaagccgcggcagaaa
ctgacgcctgcggcggaaaagcgactgcgggttctgggaagtctcgactcgcttggggcg
gggttcaccatcgcgtcccaggacctcgatatccgcggcgcgggcaatatcgtgggcgag
gagcaatcggggcatgtgaaggaggtggggttcgagctctaccaatccatgctggaggag
gcgatcacgcgcatccggtcgggcgaggacgaggggttgccgggggatggcgggcaatgg
tcgccgcagatcaacctgggcgttcctgtcttgattccagagacttacgtgccggacctc
gatgtgcggctggggctttaccggcgtttgtcgcagctggagaccaaggtggatctcgaa
ggcttcgccgccgaactgatcgaccggttcgggactttgcccaaggaagtcaacaccttg
ctgctcgttgttcgcatcaaggcgatgtgcaagcgcgcccatatcgcgcggctggatgcg
ggaccgaagggtgccaccgtccagttccacatggataaattccccaatcccaagggcttg
gtggactttgttcaagcggaaaagggcgaggccaaggtcaaggacaacaagatcgtggtg
cgccgcgactggtcgagcgaggccgagaagatcaagggcgcctttgccatcgcgcgcgat
ctggcggtgcatgcggcgggcaaggcggcctga
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integrated database retrieval system
