Tritonibacter mobilis: K529_006825
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Entry
K529_006825 CDS
T04367
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmb
Tritonibacter mobilis
Pathway
rmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K529_006825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmb03400
]
K529_006825
Enzymes [BR:
rmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K529_006825
DNA repair and recombination proteins [BR:
rmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K529_006825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
AAA_30
SecA_DEAD
RecG_dom3_C
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANP40475
UniProt:
A0A1B1A1K9
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All DBs
Position
1421328..1424783
Genome browser
AA seq
1151 aa
AA seq
DB search
MSQQSVVMGGAPEGFDARLVLKEMARGGKPVLHIARDDKRMEAMRSALRFFAPDVPVVIF
PGWDCLPYDRVSPNADISAARMATLAALVHGLPQQFILLTTLNAAMQRVPAREVLKEAAF
SARVNSRIDEDALRKFLVRMGFSQSPTVMEPGDYAVRGGIIDIFPPGESGPVRLDLFGDT
LDGARRFDPATQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYEAV
SAGRKHQGMEHWLPFFHERLETLFDYLPGATVTLDDQLTPARVARWDSIVDQYETRKIAM
DTKGRMDSVYKPTPPKNLYLDETAWSDQISAHRAVQFHPLPQASGPGVVDAGGRIGRNFA
PERQQENISLFGALADHIKAKLTKGPVVVASYSEGARERLSGLIEDEGLAETIAVADGRR
IGKAGLHLAVWALEHGFEAPDMTVISEQDVLGDRLIRKPKRRRKAENFLTEAQSLSPGDL
VVHVDHGIGRYIGLEVVTAAGAAHECLLLEYAEESKLYLPVENIELLSKYGHDEGLLDKL
GGGAWQAKKARLKERIREMADRLIRIAAERALRKAPAMDPPPHAWEEFSARFPYQETDDQ
LRAIEDVMNDLNSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAIVAPTTLLARQH
AAGFKERFRGFPLEVRQLSRFVPAKEASQTREGLAKGTVDIVVGTHALLAKNIRFQNLGL
LIIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVTEFDAITIREALLREHYRGGQSFYVVPRISDLPEIEAFLQEQLPELSYVVANGQM
AAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRQKLTDSAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGEVEGLVEGDEQWAPQINLGVPVLIPEAYVPDLDVRL
GLYRRLSSLTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKKAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQSQDGLAKVKDNKIVVRRDWRKDSDKIKGAFAIARDLAEK
IVAERKKAKTA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcaatccgtcgtcatggggggcgcgcccgaagggttcgacgcgcgtctggtt
ctgaaggaaatggcgcgcggtggtaagccggtgctgcatatcgcgcgcgatgacaaacgg
atggaggcaatgcgatccgcgctgcggttttttgcacctgacgtccccgttgtcattttt
cccggctgggattgcctgccgtatgatcgcgtgtctccaaacgcagatatctctgcggcg
cggatggcgacgcttgcggctttggtgcatgggctgccacagcagttcatcttgctcacc
acgctcaacgcagccatgcaacgtgtcccggcgcgggaagttctgaaagaggctgcgttc
tctgcgcgcgtgaattccagaatagatgaagatgcactccgcaagttcttggttcgtatg
gggttttcacaaagcccaactgtgatggaacccggtgattacgctgtgcgtggcggcatt
atcgatatcttcccacccggtgagagcggcccggtgcggttggatctgttcggcgatact
ttggatggtgcgcgacggtttgatcccgccacccaacgtacaacagaaaaactcgatctg
gtggagctggccccagtgtctgaggtcatcctcgacgaggccgcaatcacgcgttttcgc
cagaactaccgcattgagtttggggcagcaggcagtgatgatccgctctatgaggccgta
agtgccggtcgcaaacatcaggggatggagcactggctaccgtttttccatgagcggttg
gagacattgttcgactatctgcccggagccacggtcacattggatgatcaactgacgcct
gcgcgggtggcgcgttgggacagtatcgttgaccaatatgaaacccgcaaaatcgcgatg
gataccaaggggcggatggattcggtctataagccgacacccccaaagaacctgtacctt
gatgagaccgcatggagcgaccagatcagcgcgcaccgcgcggtgcagtttcatcccctg
ccgcaggcgtctggtcccggcgtggtggatgctggcggacgcatcggacgcaactttgcg
cctgagcgccaacaggaaaacatcagcctttttggtgccttggcggaccatatcaaagca
aagctgaccaaagggccggtggtcgtcgcttcttattcagaaggtgcacgcgaacggttg
agcggcctgattgaagatgaagggctggctgaaacaatagcggttgctgatgggcgcagg
attggcaaagcgggcctgcatctggccgtctgggcgctggagcacgggttcgaagcgcct
gatatgacggtaatttccgagcaggacgtgctcggtgatcgcctcatccgaaaacccaaa
cgccgccgcaaagccgagaatttcctgaccgaggcgcaatcgctctctccgggggatctt
gttgttcatgtcgatcacggcattggtcgttacatcgggctggaggtggtcacagccgcc
ggtgcagcacatgaatgtttgttgctagaatatgctgaagaatcaaagctctatttgcct
gttgagaatatcgaactgctgtcgaaatacggtcatgacgaagggctgttggacaaactt
ggcggcggcgcatggcaggccaaaaaggcacgcctgaaggagcgtattcgcgagatggcg
gatcgattgatccgtattgccgccgaacgcgctttgcgcaaagcgccagccatggatcca
ccgccgcacgcatgggaggagttttcggcacggttcccttatcaggaaaccgacgatcag
ctgcgcgccattgaggacgtgatgaacgatctgaactctggccagccgatggatcgcctg
atctgcggcgatgtgggctttggtaagacagaagtggcgatgcgtgccgcctttgtcgca
gcaatgtctggactacaggtcgccattgtcgccccgaccacattgctcgcgcgtcagcac
gcggccggtttcaaggagagatttcgcggatttcctttagaagtcaggcagttgtcgcgg
tttgttccggcaaaggaagccagtcaaacgcgcgagggtttggccaaaggtacggttgat
atcgttgtcggtacccatgcgttgctggccaagaacattcgctttcaaaatctgggcctt
ctgatcattgatgaggaacagcactttggcgtggctcacaaggagcgcctgaaacagctc
agatccgacattcatgtgctcaccctgaccgcaaccccaatcccgcgcacacttcaactt
agccttacaggggtgcgtgatctttcgattattggcacaccgcccgtggatcgccttgcc
attcgcacttatgtgacggagttcgatgccatcaccatccgcgaggcgctgctgcgggaa
cactatcgcggcgggcagagtttctacgtggtgccgcggatctcggatttgccggaaatt
gaggccttccttcaggagcaactgccggagcttagctatgtggtggcaaacggtcagatg
gcggcaggggaactcgacgaccggatgaacgccttttacgacgggaaatacgatgtcctg
ctggcgacgacgattgtggaatctggtctcgatatcccgactgccaatacgatggtggtg
catcgcgcagatatgttcgggttggctcagctctatcaaatccgggggcgtgttggacgc
tcgaagacgcgagcctatgcgtatcttacgacaaaaccgcgccagaagctgaccgatagc
gcagaaaaacgtctgcgtgttttgggatctctcgacaccctaggcgcaggatttactctt
gcatctcaggaccttgatatccgaggtgcaggtaacttgctgggggaagaacagtccggc
cagatgcgcgatgttggctatgagctttaccagtcgatgctggaagaggcgatcgccaag
atcaaatccggagaggtcgaggggctggtcgagggggatgaacaatgggcgccgcagatt
aatcttggggtgccggttctcatcccagaagcctatgttccagatctggacgtgcgactg
gggctctaccgccgtctgtcgtcactgacaacaaaagtcgaactggaagggtttgccgcc
gagctgattgaccgatttgggaaattgcctaaggaggtcaacacgttgatgctggttgtt
cggattaaggcgatgtgcaaaaaggccggtattgccaagctggatggcgggcccaaaggc
gcgaccattcagttccacaacgacaagttcgcctctccgcaaggcctggtcgagttcatt
cagtcgcaggatggtttggcgaaggtgaaggataataagatcgttgttcgccgtgactgg
cgtaaagacagcgataagatcaaaggtgcgtttgcaattgcgcgggatctggcagagaag
atcgtggcagaacgtaagaaagccaagacggcctga
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